Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_53144-0.2 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_53146-0.4 | |
| Bpl_scaf_53149-1.9 | GLR0591 PROTEIN |
| Bpl_scaf_53149-2.14 | REVERSE TRANSCRIPTASES |
| Bpl_scaf_53149-2.15 | GPALPP MOTIFS-CONTAINING PROTEIN 1 |
| Bpl_scaf_53149-2.3 | - |
| Bpl_scaf_53149-2.5 | PROSTAGLANDIN G/H SYNTHASE |
| Bpl_scaf_53149-3.10 | GTPASE ERA |
| Bpl_scaf_53149-3.11 | T-BOX PROTEIN-RELATED |
| Bpl_scaf_53149-3.12 | |
| Bpl_scaf_53149-3.17 | |
| Bpl_scaf_53149-3.29 | |
| Bpl_scaf_53149-3.30 | |
| Bpl_scaf_53149-3.32 | PROTOPORPHYRINOGEN OXIDASE |
| Bpl_scaf_53149-3.33 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| Bpl_scaf_53150-0.0 | |
| Bpl_scaf_53151-0.11 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_53152-0.2 | |
| Bpl_scaf_53153-0.4 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_53155-0.2 | AMPHIPHYSIN |
| Bpl_scaf_53159-0.7 | NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 |
| Bpl_scaf_53159-0.8 | DNA POLYMERASE DELTA SUBUNIT 2 |
| Bpl_scaf_53159-1.11 | HEDGEHOG |
| Bpl_scaf_53159-1.12 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| Bpl_scaf_53159-1.21 | THIOSULFATE SULFERTANSFERASE |
| Bpl_scaf_53159-1.7 | CEREBELLIN-RELATED |
| Bpl_scaf_53159-2.2 | |
| Bpl_scaf_53159-3.11 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| Bpl_scaf_53159-4.1 | OXIDOREDUCTASE-LIKE DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_53159-4.15 | UNCHARACTERIZED |
| Bpl_scaf_53159-4.23 | HISTONE H1 |
| Bpl_scaf_53159-4.24 | TRANSCRIPTION FACTOR MAF |
| Bpl_scaf_53163-0.1 | COLD SHOCK DOMAIN PROTEIN 2 |
| Bpl_scaf_53163-0.2 | PEROXISOME ASSEMBLY PROTEIN 26 |
| Bpl_scaf_53172-0.7 | |
| Bpl_scaf_53172-0.8 | |
| Bpl_scaf_53185-1.1 | |
| Bpl_scaf_53185-10.12 | TPR REPEAT-CONTAINING PROTEIN PA4667 |
| Bpl_scaf_53185-10.15 | |
| Bpl_scaf_53185-10.16 | AKNA DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_53185-11.11 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| Bpl_scaf_53185-11.12 | 60S RIBOSOMAL PROTEIN L28 |
| Bpl_scaf_53185-11.8 | PROTEIN ODR-4 HOMOLOG |
| Bpl_scaf_53185-12.10 | |
| Bpl_scaf_53185-12.12 | NETRIN/LAMININ-RELATED |
| Bpl_scaf_53185-12.19 | NETRIN/LAMININ-RELATED |
| Bpl_scaf_53185-2.1 | |
| Bpl_scaf_53185-3.1 | |
| Bpl_scaf_53185-3.3 | ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 19 |
| Bpl_scaf_53185-4.10 | CONTACTIN 5 |
