Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_52367-1.0 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_52367-2.13 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_52367-2.14 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_52367-2.5 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_52367-2.6 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_52367-3.19 | |
| Bpl_scaf_52367-3.20 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_52367-3.21 | |
| Bpl_scaf_52370-0.4 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_52375-0.0 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_5238-0.5 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| Bpl_scaf_5238-0.6 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_52380-0.0 | |
| Bpl_scaf_52381-0.5 | |
| Bpl_scaf_52384-0.3 | |
| Bpl_scaf_52386-0.5 | VITELLOGENIN-RELATED |
| Bpl_scaf_52387-0.3 | OS10G0105400 PROTEIN |
| Bpl_scaf_52388-0.10 | SIDESTEP PROTEIN |
| Bpl_scaf_52390-0.1 | |
| Bpl_scaf_52390-0.3 | RAB11-RELATED |
| Bpl_scaf_52391-0.4 | |
| Bpl_scaf_52392-0.1 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_52393-0.0 | |
| Bpl_scaf_52393-1.11 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
| Bpl_scaf_52393-1.12 | |
| Bpl_scaf_52393-2.0 | |
| Bpl_scaf_52393-2.7 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_52393-2.8 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
| Bpl_scaf_52393-3.17 | BETA-1,4-GALACTOSYLTRANSFERASE |
| Bpl_scaf_52393-3.27 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_52393-3.30 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_52395-0.1 | |
| Bpl_scaf_52395-0.26 | |
| Bpl_scaf_52395-0.3 | |
| Bpl_scaf_52396-0.2 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
| Bpl_scaf_52396-0.5 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_52396-0.7 | |
| Bpl_scaf_52398-0.0 | |
| Bpl_scaf_52399-0.5 | |
| Bpl_scaf_52401-0.2 | VERTNIN |
| Bpl_scaf_52401-0.5 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Bpl_scaf_52403-0.2 | ZINC FINGER PROTEIN |
| Bpl_scaf_52403-0.3 | |
| Bpl_scaf_52403-0.4 | INHIBITOR OF APOPTOSIS |
| Bpl_scaf_52403-1.7 | |
| Bpl_scaf_52403-2.10 | NADPH OXIDASE |
| Bpl_scaf_52403-2.11 | CALCINEURIN B |
| Bpl_scaf_52403-2.28 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_52403-3.3 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_52404-0.0 | EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER |
