Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_52660-4.12 | ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 9 ZCCHC9 |
| Bpl_scaf_52660-4.5 | TRNA MODIFICATION GTPASE GTPBP3 |
| Bpl_scaf_52660-5.11 | MACROPHAGE-EXPRESSED GENE 1 PROTEIN |
| Bpl_scaf_52660-5.15 | SHC TRANSFORMING PROTEIN |
| Bpl_scaf_52660-5.16 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_52660-5.42 | CYTOKINESIS PROTEIN 3 |
| Bpl_scaf_52660-5.6 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
| Bpl_scaf_52663-0.0 | |
| Bpl_scaf_52663-0.16 | |
| Bpl_scaf_52663-0.17 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
| Bpl_scaf_52663-0.19 | |
| Bpl_scaf_52663-0.5 | |
| Bpl_scaf_52670-0.5 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
| Bpl_scaf_52670-0.6 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Bpl_scaf_52670-0.8 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_52671-0.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_52671-0.8 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_52671-1.6 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| Bpl_scaf_52671-1.7 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_52671-2.0 | |
| Bpl_scaf_52671-2.18 | TRANSMEMBRANE PROTEIN 248-LIKE |
| Bpl_scaf_52671-2.19 | |
| Bpl_scaf_52671-2.7 | POLYKETIDE SYNTHASE-RELATED |
| Bpl_scaf_52671-2.8 | MAX DIMERIZATION, MAD |
| Bpl_scaf_52671-3.7 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
| Bpl_scaf_52671-3.8 | |
| Bpl_scaf_52671-4.9 | PHOSPHOGLYCERATE MUTASE-RELATED |
| Bpl_scaf_52671-5.11 | |
| Bpl_scaf_52671-5.14 | |
| Bpl_scaf_52671-5.3 | |
| Bpl_scaf_52671-5.7 | PROTEASE M1 ZINC METALLOPROTEASE |
| Bpl_scaf_52687-0.11 | PIKACHURIN-LIKE PROTEIN |
| Bpl_scaf_52687-0.17 | WSCD FAMILY MEMBER CG9164 |
| Bpl_scaf_52687-0.8 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_52687-0.9 | CADHERIN-23 |
| Bpl_scaf_52701-0.12 | |
| Bpl_scaf_52701-0.18 | |
| Bpl_scaf_52701-0.19 | REGULATOR-RELATED |
| Bpl_scaf_52701-0.22 | |
| Bpl_scaf_52705-0.4 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_52705-0.5 | 26S PROTESOME SUBUNIT 6 |
| Bpl_scaf_52715-0.2 | |
| Bpl_scaf_52715-0.6 | |
| Bpl_scaf_5272-0.20 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_5272-0.9 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_52729-0.0 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_52729-0.5 | |
| Bpl_scaf_52731-1.14 | ARGINASE |
| Bpl_scaf_52731-1.9 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| Bpl_scaf_52731-12.1 |
