About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_50283-2.21NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_50283-2.6CRUMBS FAMILY MEMBER
Bpl_scaf_50284-0.3
Bpl_scaf_50287-0.2
Bpl_scaf_50291-0.0
Bpl_scaf_50294-0.10LEUCINE-RICH REPEAT, ISOFORM F-RELATED
Bpl_scaf_50294-0.11CASEIN KINASE-RELATED
Bpl_scaf_50294-0.12PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
Bpl_scaf_50294-1.6DNA-REPAIR PROTEIN XRCC1
Bpl_scaf_50294-1.7ACTIN
Bpl_scaf_50294-2.5OPTIC ATROPHY 3 PROTEIN OPA3
Bpl_scaf_50294-2.6ATP-DEPENDENT RNA HELICASE
Bpl_scaf_50294-3.10TYROSINASE FAMILY MEMBER
Bpl_scaf_50294-3.12SYNAPTOTAGMIN 14, ISOFORM D
Bpl_scaf_50294-3.18HOMEOBOX PROTEIN HOX
Bpl_scaf_50296-0.1
Bpl_scaf_50301-0.1
Bpl_scaf_50301-0.8ATP-DEPENDENT DNA HELICASE
Bpl_scaf_50302-0.3SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
Bpl_scaf_50303-0.3
Bpl_scaf_50304-0.4ALPHA-L-FUCOSIDASE
Bpl_scaf_50304-0.6DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
Bpl_scaf_50304-1.19CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Bpl_scaf_50304-1.8
Bpl_scaf_50304-1.9ALPHA-L-FUCOSIDASE
Bpl_scaf_50304-2.3VOLTAGE-GATED POTASSIUM CHANNEL
Bpl_scaf_50304-3.0BTB AND MATH DOMAIN-CONTAINING PROTEIN 36-RELATED
Bpl_scaf_50304-3.10RAS-RELATED PROTEIN RAB
Bpl_scaf_50304-3.11INHIBITOR OF APOPTOSIS
Bpl_scaf_50305-0.2
Bpl_scaf_50307-0.2
Bpl_scaf_50307-0.9
Bpl_scaf_50307-1.13RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_50307-1.3SIMILAR TO RIKEN CDNA E130308A19
Bpl_scaf_50307-1.8
Bpl_scaf_50307-2.4SCAVENGER RECEPTOR CLASS F
Bpl_scaf_50307-2.6
Bpl_scaf_50307-3.12
Bpl_scaf_50307-3.13
Bpl_scaf_50307-3.15SCAVENGER RECEPTOR CLASS F
Bpl_scaf_50307-3.16RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_50307-3.5
Bpl_scaf_50307-3.6
Bpl_scaf_50308-0.0
Bpl_scaf_50309-0.0
Bpl_scaf_50309-0.6TATA-BOX BINDING PROTEIN
Bpl_scaf_50310-0.0
Bpl_scaf_50310-0.8ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Bpl_scaf_50310-0.9
Bpl_scaf_50311-0.0
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