Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_50011-1.15 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Bpl_scaf_50011-1.16 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Bpl_scaf_50011-1.17 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| Bpl_scaf_50033-0.22 | THROMBOSPONDIN |
| Bpl_scaf_50033-0.23 | THROMBOSPONDIN |
| Bpl_scaf_50033-0.24 | PROTEIN PSIB-RELATED-RELATED |
| Bpl_scaf_50033-1.13 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
| Bpl_scaf_50033-1.17 | |
| Bpl_scaf_50033-1.18 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_50033-1.20 | NUCLEAR HORMONE RECEPTOR HR3-RELATED |
| Bpl_scaf_50033-1.7 | |
| Bpl_scaf_50033-1.8 | |
| Bpl_scaf_50041-0.0 | |
| Bpl_scaf_50044-0.2 | |
| Bpl_scaf_50048-0.1 | FMRFAMIDE RECEPTOR-RELATED |
| Bpl_scaf_50048-1.0 | |
| Bpl_scaf_50048-1.11 | MAHOGUNIN |
| Bpl_scaf_50048-1.4 | PR DOMAIN ZINC FINGER PROTEIN |
| Bpl_scaf_50048-1.5 | UBA-LIKE DOMAIN-CONTAINING PROTEIN 2 |
| Bpl_scaf_50051-0.0 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_50061-0.0 | |
| Bpl_scaf_50061-0.1 | DOMON DOMAIN-CONTAINING PROTEIN FRRS1L |
| Bpl_scaf_50065-0.0 | |
| Bpl_scaf_50065-1.3 | |
| Bpl_scaf_50075-0.3 | CAMK FAMILY PROTEIN KINASE |
| Bpl_scaf_50079-1.6 | EBNA2 BINDING PROTEIN P100 |
| Bpl_scaf_50079-1.7 | GEO07735P1-RELATED-RELATED |
| Bpl_scaf_50079-1.8 | LEUCOKININ RECEPTOR-RELATED |
| Bpl_scaf_5008-0.2 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
| Bpl_scaf_50094-0.10 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_50094-0.16 | |
| Bpl_scaf_50094-2.7 | - |
| Bpl_scaf_50094-2.8 | |
| Bpl_scaf_50094-2.9 | PROTEIN FOLDING REGULATOR |
| Bpl_scaf_50096-0.1 | |
| Bpl_scaf_50106-0.2 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| Bpl_scaf_50107-0.3 | |
| Bpl_scaf_50108-0.0 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_50109-0.12 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_50109-0.30 | TRANSMEMBRANE PROTEIN 117 |
| Bpl_scaf_50109-0.7 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_50109-1.1 | |
| Bpl_scaf_50109-1.22 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| Bpl_scaf_50109-1.23 | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN |
| Bpl_scaf_50109-1.24 | |
| Bpl_scaf_50109-2.26 | |
| Bpl_scaf_50109-2.28 | SULFATE TRANSPORTER |
| Bpl_scaf_50109-2.29 | |
| Bpl_scaf_50109-2.30 | |
| Bpl_scaf_50109-2.31 |
