Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_49537-4.6 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_49537-5.14 | |
| Bpl_scaf_49537-5.5 | FAT ATYPICAL CADHERIN-RELATED |
| Bpl_scaf_49537-5.9 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_49537-6.9 | OS10G0105400 PROTEIN |
| Bpl_scaf_49537-7.6 | ACYL-COA SYNTHETASE |
| Bpl_scaf_49537-8.6 | LUNG ADENOMA SUSCEPTIBILITY 1-RELATED |
| Bpl_scaf_49537-8.7 | KINESIN-LIKE PROTEIN KLP-3 |
| Bpl_scaf_49537-9.0 | |
| Bpl_scaf_49537-9.17 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_49537-9.20 | HOMEO BOX HB9 LIKE A-RELATED |
| Bpl_scaf_49537-9.23 | RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B |
| Bpl_scaf_49537-9.24 | COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 |
| Bpl_scaf_49537-9.26 | REVERSE TRANSCRIPTASES |
| Bpl_scaf_49537-9.34 | |
| Bpl_scaf_49537-9.36 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| Bpl_scaf_49543-0.0 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_49544-0.3 | |
| Bpl_scaf_49545-0.0 | |
| Bpl_scaf_49546-0.11 | SPERMATHECAL PHYSIOLOGY VARIANT |
| Bpl_scaf_49546-0.16 | |
| Bpl_scaf_49546-1.20 | KELCH PROTEIN |
| Bpl_scaf_49546-1.9 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
| Bpl_scaf_49546-2.2 | |
| Bpl_scaf_49546-2.4 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_49546-2.6 | |
| Bpl_scaf_49546-3.14 | SOSS COMPLEX SUBUNIT C |
| Bpl_scaf_49546-3.16 | UNCHARACTERIZED |
| Bpl_scaf_49546-3.17 | SORTING NEXIN-4 |
| Bpl_scaf_49546-3.20 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Bpl_scaf_49546-3.40 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 |
| Bpl_scaf_49546-3.41 | UNCHARACTERIZED |
| Bpl_scaf_49546-3.42 | |
| Bpl_scaf_49546-3.43 | 40S RIBOSOMAL PROTEIN S28 |
| Bpl_scaf_49547-0.4 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_49555-0.0 | DENTIN SIALOPHOSPHOPROTEIN |
| Bpl_scaf_49555-0.10 | |
| Bpl_scaf_49555-0.25 | |
| Bpl_scaf_49555-0.4 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Bpl_scaf_49555-1.2 | TOLL-INTERACTING PROTEIN |
| Bpl_scaf_49555-2.3 | RETINOIC ACID-INDUCED PROTEIN 2 |
| Bpl_scaf_49555-3.12 | DEP DOMAIN-CONTAINING |
| Bpl_scaf_49555-3.18 | NEL HOMOLOG |
| Bpl_scaf_49555-3.20 | NEL HOMOLOG |
| Bpl_scaf_49555-3.21 | NEL HOMOLOG |
| Bpl_scaf_49555-3.23 | SHIPPO-1-RELATED |
| Bpl_scaf_49555-3.8 | |
| Bpl_scaf_49557-0.0 | |
| Bpl_scaf_49559-0.1 | PUTATIVE-RELATED |
| Bpl_scaf_49561-0.0 |
