Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_49470-1.3 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_49470-2.2 | |
| Bpl_scaf_49470-2.5 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_49482-0.3 | |
| Bpl_scaf_49495-0.3 | CNH DOMAIN CONTAINING |
| Bpl_scaf_49496-0.1 | PX DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_49498-0.4 | DNA HELICASE-RELATED |
| Bpl_scaf_49503-0.2 | |
| Bpl_scaf_49505-0.4 | |
| Bpl_scaf_49505-0.8 | |
| Bpl_scaf_49505-2.11 | |
| Bpl_scaf_49505-2.12 | C2 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_49506-0.0 | |
| Bpl_scaf_49508-0.4 | |
| Bpl_scaf_49509-0.2 | |
| Bpl_scaf_4951-0.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| Bpl_scaf_49515-1.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_49515-2.10 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
| Bpl_scaf_4952-0.0 | |
| Bpl_scaf_4952-0.8 | |
| Bpl_scaf_4952-1.5 | SPARC OSTEONECTIN |
| Bpl_scaf_4952-2.28 | TESTIS-EXPRESSED PROTEIN 47 |
| Bpl_scaf_4952-2.6 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_4952-2.8 | ALPHA-L-FUCOSIDASE |
| Bpl_scaf_4952-3.12 | GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN |
| Bpl_scaf_4952-3.13 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| Bpl_scaf_4952-3.16 | DYNEIN INTERMEDIATE CHAIN |
| Bpl_scaf_4952-3.29 | INDOLEAMINE 2,3-DIOXYGENASE |
| Bpl_scaf_4952-3.32 | WD40 REPEAT DOMAIN 95 |
| Bpl_scaf_4952-3.7 | CARBOXYLESTERASE |
| Bpl_scaf_49534-0.6 | WD REPEAT PROTEIN |
| Bpl_scaf_49534-1.0 | |
| Bpl_scaf_49534-1.12 | |
| Bpl_scaf_49534-1.16 | PROTEASE M1 ZINC METALLOPROTEASE |
| Bpl_scaf_49534-1.3 | |
| Bpl_scaf_49535-0.13 | GTP CYCLOHYDROLASE I |
| Bpl_scaf_49535-0.7 | UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN |
| Bpl_scaf_49536-0.6 | |
| Bpl_scaf_49536-0.7 | SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10-RELATED |
| Bpl_scaf_49536-1.11 | MULTIVESICULAR BODY SUBUNIT 12B |
| Bpl_scaf_49536-1.12 | MITOCHONDRIAL RIBOSOMAL PROTEIN S18B |
| Bpl_scaf_49536-1.13 | |
| Bpl_scaf_49536-2.11 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_49536-2.12 | |
| Bpl_scaf_49536-2.16 | DC12-RELATED |
| Bpl_scaf_49536-2.18 | QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 |
| Bpl_scaf_49537-2.11 | ENDONUCLEASE-RELATED |
| Bpl_scaf_49537-2.7 | U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 |
| Bpl_scaf_49537-4.11 | PROTEIN CBG12474 |
| Bpl_scaf_49537-4.14 | PROTEIN CBG12474 |
