Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_49180-5.12 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| Bpl_scaf_49180-5.15 | |
| Bpl_scaf_49181-0.2 | LITHOSTATHINE |
| Bpl_scaf_49181-0.3 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_49181-0.4 | OS10G0105400 PROTEIN |
| Bpl_scaf_49181-0.7 | OS10G0105400 PROTEIN |
| Bpl_scaf_49189-0.12 | |
| Bpl_scaf_49189-0.13 | |
| Bpl_scaf_49189-0.14 | |
| Bpl_scaf_49189-0.7 | |
| Bpl_scaf_4919-0.2 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| Bpl_scaf_4919-1.7 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| Bpl_scaf_4919-1.8 | |
| Bpl_scaf_49197-0.1 | |
| Bpl_scaf_49197-0.11 | |
| Bpl_scaf_49197-0.8 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_49213-0.8 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_49216-0.7 | O-ACYLTRANSFERASE |
| Bpl_scaf_49216-0.8 | O-ACYLTRANSFERASE |
| Bpl_scaf_49233-0.7 | FIBROBLAST GROWTH FACTOR RECEPTOR |
| Bpl_scaf_4924-0.0 | |
| Bpl_scaf_49244-0.0 | |
| Bpl_scaf_49244-0.5 | |
| Bpl_scaf_49244-0.7 | HEDGEHOG |
| Bpl_scaf_49256-0.6 | F-BOX ONLY PROTEIN 47 |
| Bpl_scaf_49256-1.2 | MYB PROTEIN-RELATED |
| Bpl_scaf_49256-2.11 | RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 |
| Bpl_scaf_49256-2.23 | |
| Bpl_scaf_49256-2.24 | CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED |
| Bpl_scaf_49256-2.25 | CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED |
| Bpl_scaf_49256-2.7 | HISTONE H3 |
| Bpl_scaf_49256-3.2 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| Bpl_scaf_49256-3.6 | RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 |
| Bpl_scaf_49256-5.0 | |
| Bpl_scaf_49256-5.14 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_49256-5.15 | |
| Bpl_scaf_49256-5.17 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| Bpl_scaf_49256-5.18 | BATTENIN |
| Bpl_scaf_49256-5.28 | BATTENIN |
| Bpl_scaf_49256-5.7 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED |
| Bpl_scaf_49256-5.8 | |
| Bpl_scaf_49265-0.0 | CGI-141-RELATED/LIPASE CONTAINING PROTEIN |
| Bpl_scaf_49265-0.14 | PROKARYOTIC DNA TOPOISOMERASE |
| Bpl_scaf_49265-0.6 | |
| Bpl_scaf_49265-0.8 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Bpl_scaf_49270-0.2 | ACROSIN-RELATED |
| Bpl_scaf_49278-0.10 | |
| Bpl_scaf_49278-0.11 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_49278-0.12 | |
| Bpl_scaf_49278-0.13 |
