Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_49137-1.23 | AGAP000321-PA |
| Bpl_scaf_49137-1.4 | AGAP000321-PA |
| Bpl_scaf_49137-1.9 | |
| Bpl_scaf_49137-2.0 | |
| Bpl_scaf_49137-3.3 | MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2 |
| Bpl_scaf_49137-3.4 | AGAP000321-PA |
| Bpl_scaf_49137-4.2 | |
| Bpl_scaf_49137-4.3 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
| Bpl_scaf_49159-0.2 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_49159-0.4 | |
| Bpl_scaf_4916-0.17 | SEC24-RELATED PROTEIN |
| Bpl_scaf_4916-0.6 | ACETYL-COA C-ACYLTRANSFERASE |
| Bpl_scaf_4916-0.9 | |
| Bpl_scaf_49160-0.1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_49160-0.8 | |
| Bpl_scaf_49160-1.12 | |
| Bpl_scaf_49160-1.16 | |
| Bpl_scaf_49160-2.6 | SERINE/THREONINE-PROTEIN KINASE 16 |
| Bpl_scaf_49160-2.7 | DYNACTIN SUBUNIT |
| Bpl_scaf_49160-3.3 | |
| Bpl_scaf_49160-3.6 | CYTOCHROME P450 20A1 |
| Bpl_scaf_49160-3.7 | |
| Bpl_scaf_49160-3.9 | PROTEIN CBG20567 |
| Bpl_scaf_49160-4.6 | ALADIN/ADRACALIN/AAAS |
| Bpl_scaf_49160-4.7 | ALADIN/ADRACALIN/AAAS |
| Bpl_scaf_49160-4.9 | CYTOCHROME P450 20A1 |
| Bpl_scaf_49160-5.25 | |
| Bpl_scaf_49160-5.27 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_49160-5.28 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_49160-5.29 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_49167-0.18 | |
| Bpl_scaf_49167-0.8 | PHOSPHOENOLPYRUVATE CARBOXYKINASE |
| Bpl_scaf_49174-0.12 | MUCIN 4-RELATED |
| Bpl_scaf_49174-0.17 | MUCIN 4-RELATED |
| Bpl_scaf_49174-0.19 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_49174-0.3 | |
| Bpl_scaf_49174-0.4 | |
| Bpl_scaf_49180-0.13 | KYNURENINE 3-MONOOXYGENASE |
| Bpl_scaf_49180-0.14 | COILED-COIL DOMAIN CONTAINING 198 |
| Bpl_scaf_49180-0.15 | RIBONUCLEASE P_MRP PROTEIN SUBUNIT POP5 |
| Bpl_scaf_49180-0.30 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| Bpl_scaf_49180-1.5 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| Bpl_scaf_49180-2.17 | |
| Bpl_scaf_49180-2.4 | HEAT SHOCK PROTEIN 70KDA |
| Bpl_scaf_49180-3.3 | DNA-DIRECTED RNA POLYMERASE II, III |
| Bpl_scaf_49180-4.12 | |
| Bpl_scaf_49180-4.13 | |
| Bpl_scaf_49180-4.7 | MICROTUBULE ASSOCIATED PROTEIN XMAP215 |
| Bpl_scaf_49180-5.10 | NUCLEAR FACTOR-RELATED |
| Bpl_scaf_49180-5.11 | TRANSCRIPTIONAL ADAPTER 3-RELATED |
