Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_49868-1.13 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
| Bpl_scaf_49868-2.7 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Bpl_scaf_49868-2.8 | |
| Bpl_scaf_49868-3.2 | ANTIGEN BSP, PUTATIVE-RELATED |
| Bpl_scaf_49868-3.3 | CWF19, CELL CYCLE CONTROL PROTEIN |
| Bpl_scaf_49868-4.3 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_49868-4.4 | |
| Bpl_scaf_49868-4.7 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_49868-5.4 | CALPAIN-7 |
| Bpl_scaf_49868-5.6 | |
| Bpl_scaf_49868-6.4 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| Bpl_scaf_49868-6.5 | RAS-RELATED PROTEIN RAB |
| Bpl_scaf_49868-6.6 | ORMDL PROTEINS |
| Bpl_scaf_49876-0.11 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT |
| Bpl_scaf_49876-0.2 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 |
| Bpl_scaf_49876-0.6 | INTRAFLAGELLAR TRANSPORT PROTEIN 25 HOMOLOG |
| Bpl_scaf_49876-0.7 | N-LINKED OLIGOSACCHARIDE PROCESSING |
| Bpl_scaf_49882-0.19 | NEPHRIN |
| Bpl_scaf_49882-0.22 | CONTACTIN 5 |
| Bpl_scaf_49882-0.24 | |
| Bpl_scaf_4989-0.8 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_49891-0.5 | |
| Bpl_scaf_49896-0.1 | |
| Bpl_scaf_49896-0.19 | |
| Bpl_scaf_49896-0.20 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_49896-1.0 | |
| Bpl_scaf_49896-1.1 | |
| Bpl_scaf_49896-1.6 | INTERLEUKIN-17 RECEPTOR |
| Bpl_scaf_49896-10.18 | ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 |
| Bpl_scaf_49896-10.6 | T-CELL ACUTE LYMPHOCYTIC LEUKEMIA/STEM CELL LEUKEMIA-RELATED |
| Bpl_scaf_49896-10.9 | GASTRULATION DEFECTIVE PROTEIN 1-RELATED |
| Bpl_scaf_49896-11.14 | CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED |
| Bpl_scaf_49896-11.15 | RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED |
| Bpl_scaf_49896-11.25 | PROTEIN FAM183B |
| Bpl_scaf_49896-11.26 | |
| Bpl_scaf_49896-11.29 | |
| Bpl_scaf_49896-12.2 | PORCUPINE |
| Bpl_scaf_49896-14.10 | ZINC FINGER PROTEIN |
| Bpl_scaf_49896-14.14 | GUANYLYL CYCLASE |
| Bpl_scaf_49896-14.47 | |
| Bpl_scaf_49896-14.49 | ZINC FINGER PROTEIN |
| Bpl_scaf_49896-14.50 | USP DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_49896-2.11 | CDNA SEQUENCE BC048562 |
| Bpl_scaf_49896-2.12 | |
| Bpl_scaf_49896-2.3 | |
| Bpl_scaf_49896-2.8 | G PATCH AND KOW-CONTAINING |
| Bpl_scaf_49896-4.4 | MIP04163P |
| Bpl_scaf_49896-4.5 | LIM DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_49896-5.10 | UNCHARACTERIZED |
| Bpl_scaf_49896-5.11 |
