About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80%23,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.TU.17244TUBULIN
mRNA.BJAM.TU.17245TUBULIN
mRNA.BJAM.TU.17375SOLUTE CARRIER FAMILY 22 MEMBER
mRNA.BJAM.TU.1739SET AND MYND DOMAIN-CONTAINING PROTEIN 4
mRNA.BJAM.TU.17392COATOMER SUBUNIT BETA
mRNA.BJAM.TU.1740TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1
mRNA.BJAM.TU.17462E3 UBIQUITIN-PROTEIN LIGASE MARCH5
mRNA.BJAM.TU.1746740S RIBOSOMAL PROTEIN S12
mRNA.BJAM.TU.1746840S RIBOSOMAL PROTEIN S12
mRNA.BJAM.TU.1750RETINOL DEHYDROGENASE
mRNA.BJAM.TU.1751BOLA TRANSCRIPTION REGULATOR
mRNA.BJAM.TU.1756TRNA DIMETHYLALLYLTRANSFERASE
mRNA.BJAM.TU.17693MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L42
mRNA.BJAM.TU.17694COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6
mRNA.BJAM.TU.17700ACYL-COA DEHYDROGENASE
mRNA.BJAM.TU.17722
mRNA.BJAM.TU.17850THO COMPLEX SUBUNIT 3 THO3
mRNA.BJAM.TU.17899
mRNA.BJAM.TU.1800DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG
mRNA.BJAM.TU.18002RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
mRNA.BJAM.TU.18003RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
mRNA.BJAM.TU.18040NEURALIZED
mRNA.BJAM.TU.18101
mRNA.BJAM.TU.18164CLATHRIN LIGHT CHAIN
mRNA.BJAM.TU.18240PROGRAMMED CELL DEATH PROTEIN 5
mRNA.BJAM.TU.18241ATP-DEPENDENT RNA HELICASE
mRNA.BJAM.TU.18280EXTRA SPINDLE POLES 1-RELATED
mRNA.BJAM.TU.18304RAN GTPASE
mRNA.BJAM.TU.18321SOLUTE CARRIER FAMILY 22 MEMBER
mRNA.BJAM.TU.1835
mRNA.BJAM.TU.18388CYTOCHROME P450 508A4-RELATED
mRNA.BJAM.TU.18390
mRNA.BJAM.TU.18394VACUOLAR PROTON ATPASES
mRNA.BJAM.TU.1843UNCHARACTERIZED
mRNA.BJAM.TU.1844UPF0545 PROTEIN C22ORF39
mRNA.BJAM.TU.18461THIOREDOXIN PEROXIDASE
mRNA.BJAM.TU.18473N-ACETYLTRANSFERASE-RELATED
mRNA.BJAM.TU.18474N-ACETYLTRANSFERASE-RELATED
mRNA.BJAM.TU.18718DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
mRNA.BJAM.TU.18726ATP-DEPENDENT RNA AND DNA HELICASE
mRNA.BJAM.TU.18806UBIQUITIN-ACTIVATING ENZYME E1
mRNA.BJAM.TU.1881PHYTANOYL-COA ALPHA-HYDROXYLASE
mRNA.BJAM.TU.18818COATOMER SUBUNIT BETA
mRNA.BJAM.TU.18832PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED
mRNA.BJAM.TU.18878ZINC FINGER, CCHC DOMAIN CONTAINING 8
mRNA.BJAM.TU.1890WD-REPEAT PROTEIN BING4
mRNA.BJAM.TU.18904PROSTAGLANDIN G/H SYNTHASE
mRNA.BJAM.TU.18905EPOXIDE HYDROLASE 1-RELATED
mRNA.BJAM.TU.18923TRYPSIN-RELATED
mRNA.BJAM.TU.18941SERINE PROTEASE INHIBITOR, SERPIN
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