Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Bathynomus jamesi | Arthropoda | - | Hydrothermal vent | 898 | near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E) | 1955234 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM2301448v1 | 5.89Gb | Contig | 2022 | JAJOZX01 | Institute of Oceanology, Chinese Academy of Sciences | PRJNA776076 | 94.80% | 23,221 |
Title | Journal | Pubmed ID |
---|---|---|
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environment | BMC Biology | 35562825 |
Gene ID | Description |
---|---|
mRNA.BJAM.TU.17244 | TUBULIN |
mRNA.BJAM.TU.17245 | TUBULIN |
mRNA.BJAM.TU.17375 | SOLUTE CARRIER FAMILY 22 MEMBER |
mRNA.BJAM.TU.1739 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
mRNA.BJAM.TU.17392 | COATOMER SUBUNIT BETA |
mRNA.BJAM.TU.1740 | TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 |
mRNA.BJAM.TU.17462 | E3 UBIQUITIN-PROTEIN LIGASE MARCH5 |
mRNA.BJAM.TU.17467 | 40S RIBOSOMAL PROTEIN S12 |
mRNA.BJAM.TU.17468 | 40S RIBOSOMAL PROTEIN S12 |
mRNA.BJAM.TU.1750 | RETINOL DEHYDROGENASE |
mRNA.BJAM.TU.1751 | BOLA TRANSCRIPTION REGULATOR |
mRNA.BJAM.TU.1756 | TRNA DIMETHYLALLYLTRANSFERASE |
mRNA.BJAM.TU.17693 | MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L42 |
mRNA.BJAM.TU.17694 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6 |
mRNA.BJAM.TU.17700 | ACYL-COA DEHYDROGENASE |
mRNA.BJAM.TU.17722 | |
mRNA.BJAM.TU.17850 | THO COMPLEX SUBUNIT 3 THO3 |
mRNA.BJAM.TU.17899 | |
mRNA.BJAM.TU.1800 | DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG |
mRNA.BJAM.TU.18002 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
mRNA.BJAM.TU.18003 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
mRNA.BJAM.TU.18040 | NEURALIZED |
mRNA.BJAM.TU.18101 | |
mRNA.BJAM.TU.18164 | CLATHRIN LIGHT CHAIN |
mRNA.BJAM.TU.18240 | PROGRAMMED CELL DEATH PROTEIN 5 |
mRNA.BJAM.TU.18241 | ATP-DEPENDENT RNA HELICASE |
mRNA.BJAM.TU.18280 | EXTRA SPINDLE POLES 1-RELATED |
mRNA.BJAM.TU.18304 | RAN GTPASE |
mRNA.BJAM.TU.18321 | SOLUTE CARRIER FAMILY 22 MEMBER |
mRNA.BJAM.TU.1835 | |
mRNA.BJAM.TU.18388 | CYTOCHROME P450 508A4-RELATED |
mRNA.BJAM.TU.18390 | |
mRNA.BJAM.TU.18394 | VACUOLAR PROTON ATPASES |
mRNA.BJAM.TU.1843 | UNCHARACTERIZED |
mRNA.BJAM.TU.1844 | UPF0545 PROTEIN C22ORF39 |
mRNA.BJAM.TU.18461 | THIOREDOXIN PEROXIDASE |
mRNA.BJAM.TU.18473 | N-ACETYLTRANSFERASE-RELATED |
mRNA.BJAM.TU.18474 | N-ACETYLTRANSFERASE-RELATED |
mRNA.BJAM.TU.18718 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
mRNA.BJAM.TU.18726 | ATP-DEPENDENT RNA AND DNA HELICASE |
mRNA.BJAM.TU.18806 | UBIQUITIN-ACTIVATING ENZYME E1 |
mRNA.BJAM.TU.1881 | PHYTANOYL-COA ALPHA-HYDROXYLASE |
mRNA.BJAM.TU.18818 | COATOMER SUBUNIT BETA |
mRNA.BJAM.TU.18832 | PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED |
mRNA.BJAM.TU.18878 | ZINC FINGER, CCHC DOMAIN CONTAINING 8 |
mRNA.BJAM.TU.1890 | WD-REPEAT PROTEIN BING4 |
mRNA.BJAM.TU.18904 | PROSTAGLANDIN G/H SYNTHASE |
mRNA.BJAM.TU.18905 | EPOXIDE HYDROLASE 1-RELATED |
mRNA.BJAM.TU.18923 | TRYPSIN-RELATED |
mRNA.BJAM.TU.18941 | SERINE PROTEASE INHIBITOR, SERPIN |