About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_019311-T1
LLU|FUN_019312-T1METHYLMALONYL-COA EPIMERASE
LLU|FUN_019313-T1ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1
LLU|FUN_019314-T1
LLU|FUN_019315-T1
LLU|FUN_019316-T1
LLU|FUN_019317-T1
LLU|FUN_019318-T1TOLL-LIKE RECEPTOR
LLU|FUN_019319-T1NUCLEOLAR RNA-ASSOCIATED PROTEIN
LLU|FUN_019320-T1
LLU|FUN_019321-T1
LLU|FUN_019322-T1
LLU|FUN_019323-T1PHOSPHORYLASE B KINASE REGULATORY SUBUNIT
LLU|FUN_019324-T1GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER
LLU|FUN_019325-T1L-FUCOSE KINASE
LLU|FUN_019326-T1GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER
LLU|FUN_019327-T1
LLU|FUN_019328-T1T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG
LLU|FUN_019329-T1
LLU|FUN_019330-T1T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG
LLU|FUN_019331-T1G PATCH DOMAIN-CONTAINING PROTEIN 1
LLU|FUN_019332-T1PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
LLU|FUN_019333-T1UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL
LLU|FUN_019334-T1GLOMULIN
LLU|FUN_019335-T1LEUCINE-RICH REPEAT, ISOFORM F-RELATED
LLU|FUN_019336-T1
LLU|FUN_019338-T1
LLU|FUN_019339-T1TRANSPORT PROTEIN TRAPP
LLU|FUN_019340-T1
LLU|FUN_019341-T1ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1
LLU|FUN_019342-T1
LLU|FUN_019343-T1
LLU|FUN_019344-T1IRE1-RELATED
LLU|FUN_019345-T1
LLU|FUN_019346-T1SOLUTE CARRIER FAMILY 52
LLU|FUN_019347-T1
LLU|FUN_019348-T1
LLU|FUN_019349-T1
LLU|FUN_019350-T1
LLU|FUN_019351-T1
LLU|FUN_019352-T1METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE
LLU|FUN_019353-T1METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE
LLU|FUN_019354-T1BLR2807 PROTEIN
LLU|FUN_019355-T1ADENYLATE CYCLASE TYPE 1
LLU|FUN_019356-T1ADENYLATE CYCLASE TYPE 1
LLU|FUN_019357-T1METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE
LLU|FUN_019358-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60
LLU|FUN_019359-T1
LLU|FUN_019360-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
LLU|FUN_019361-T1UNCHARACTERIZED
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