About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_019261-T1SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 1, MITOCHONDRIAL
LLU|FUN_019262-T1L-ASPARAGINASE
LLU|FUN_019263-T1ACTIN
LLU|FUN_019264-T1
LLU|FUN_019265-T1MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
LLU|FUN_019266-T1MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
LLU|FUN_019267-T1TRANSMEMBRANE PROTEIN 179
LLU|FUN_019268-T1PRE-MRNA PROCESSING PROTEIN PRP39-RELATED
LLU|FUN_019269-T1ZINC TRANSPORTER 6
LLU|FUN_019270-T1
LLU|FUN_019271-T1
LLU|FUN_019272-T1
LLU|FUN_019273-T1CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT GAMMA
LLU|FUN_019274-T1CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT GAMMA
LLU|FUN_019275-T1BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN
LLU|FUN_019276-T1
LLU|FUN_019277-T1POLY A POLYMERASE
LLU|FUN_019278-T1
LLU|FUN_019279-T1MONOCARBOXYLATE TRANSPORTER
LLU|FUN_019280-T1MONOCARBOXYLATE TRANSPORTER
LLU|FUN_019281-T1HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1
LLU|FUN_019282-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
LLU|FUN_019283-T1
LLU|FUN_019284-T1
LLU|FUN_019285-T1SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2
LLU|FUN_019286-T1
LLU|FUN_019287-T1POTASSIUM CHANNEL, SUBFAMILY K
LLU|FUN_019288-T1-
LLU|FUN_019289-T1
LLU|FUN_019290-T1
LLU|FUN_019291-T1POTASSIUM CHANNEL, SUBFAMILY K
LLU|FUN_019292-T1
LLU|FUN_019293-T1
LLU|FUN_019294-T1
LLU|FUN_019295-T1
LLU|FUN_019296-T1CLASP
LLU|FUN_019297-T1CLASP
LLU|FUN_019298-T1ZETA-COAT PROTEIN
LLU|FUN_019299-T1SWI/SNF COMPLEX-RELATED
LLU|FUN_019300-T1COAGULATION FACTOR
LLU|FUN_019301-T1
LLU|FUN_019302-T1CRUMBS FAMILY MEMBER
LLU|FUN_019303-T1
LLU|FUN_019304-T1
LLU|FUN_019305-T1
LLU|FUN_019306-T1
LLU|FUN_019307-T1
LLU|FUN_019308-T1
LLU|FUN_019309-T1
LLU|FUN_019310-T1
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