About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS18301CDC68 RELATED
HS18302DED DOMAIN-CONTAINING PROTEIN
HS18303B-BOX DOMAIN CONTAINING
HS18304DED DOMAIN-CONTAINING PROTEIN
HS18305MITOCHONDRIAL RIBOSOMAL PROTEIN L48
HS18306DED DOMAIN-CONTAINING PROTEIN
HS18307DED DOMAIN-CONTAINING PROTEIN
HS18308CALSEQUESTRIN
HS18309B-BOX DOMAIN CONTAINING
HS18310B-BOX DOMAIN CONTAINING
HS18311GTPASE, IMAP FAMILY MEMBER-RELATED
HS18312GTPASE, IMAP FAMILY MEMBER-RELATED
HS18313GTPASE, IMAP FAMILY MEMBER-RELATED
HS18314GTPASE, IMAP FAMILY MEMBER-RELATED
HS18315UNCHARACTERIZED
HS18316HOMEOBOX PROTEIN EMX-RELATED
HS18317TEX261 PROTEIN
HS18318SHOOTIN-1
HS18319ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53
HS18320PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
HS18321PROTEIN INTURNED
HS18322AMINOTRANSFERASE
HS18323MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
HS18324CHLORIDE CHANNEL PROTEIN
HS18325
HS18326NITRILASE-RELATED
HS18327PREFOLDIN SUBUNIT 2
HS18328BETA-1,4-GLUCURONYLTRANSFERASE 1
HS18329HOMEOBOX PROTEIN SIX
HS18330ACTIN
HS18331
HS18332GALACTOSE-3-O-SULFOTRANSFERASE
HS18333GALACTOSE-3-O-SULFOTRANSFERASE
HS18334SUPEROXIDE DISMUTASE CU-ZN -RELATED
HS18335OS02G0815200 PROTEIN
HS18336
HS18337SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
HS18338
HS18339PROTEIN KINASE C, MU
HS18340KINESIN LIGHT CHAIN
HS18341
HS18342PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN
HS18343SPLICING FACTOR 3B
HS18344
HS18345CALPAIN
HS18346METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE
HS18347INWARD RECTIFIER POTASSIUM CHANNEL
HS18348IMMUNOGLOBULIN FC RECEPTOR
HS18349IMMUNOGLOBULIN FC RECEPTOR
HS18350
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