About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS18001SARM1
HS18002ZGC:174356
HS18003SOLUTE CARRIER FAMILY 13 MEMBER
HS18004FORKHEAD BOX PROTEIN N1
HS18005RETINAL PROTEIN 4
HS18006BETA/GAMMA CRYSTALLIN
HS18007BETA/GAMMA CRYSTALLIN
HS18008PROTEASE M14 CARBOXYPEPTIDASE
HS18009GOS-28 SNARE- RELATED
HS18010
HS18011NG5
HS18012ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED
HS18013ABHYDROLASE DOMAIN-CONTAINING PROTEIN
HS18014REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18015REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18016CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS18017BCR-ASSOCIATED PROTEIN, BAP
HS18018TRNA-DIHYDROURIDINE SYNTHASE
HS18019-
HS18020VACUOLAR SORTING PROTEIN 53
HS18021SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS18022REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18023REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18024CCCH ZINC FINGER/TIS11-RELATED
HS18025CCCH ZINC FINGER/TIS11-RELATED
HS18026TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B
HS18027BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 3
HS18028
HS18029HEDGEHOG-INTERACTING PROTEIN
HS18030YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN
HS18031UBIQUITIN-PROTEIN LIGASE E3A-RELATED
HS18032BETA TRANSDUCIN-RELATED PROTEIN
HS18033FCH AND DOUBLE SH3 DOMAINS PROTEIN
HS18034PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS18035TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 19L
HS18036RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS18037PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS18038MYELIN-ASSOCIATED NEURITE-OUTGROWTH INHIBITOR-RELATED
HS18039KELCH PROTEIN
HS18040UNCHARACTERIZED
HS18041CWF19, CELL CYCLE CONTROL PROTEIN
HS18042CWF19, CELL CYCLE CONTROL PROTEIN
HS18043GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
HS18044
HS18045PHOSPHOPANTETHEINE TRANSFERASE
HS18046ZINC FINGER PROTEIN
HS18047TRANSCRIPTIONAL REPRESSOR PROTEIN YY
HS18048
HS18049IONOTROPIC GLUTAMATE RECEPTOR
HS18050SI:CH211-196P9.1-RELATED
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