About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS17901REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17902
HS17903RAS-RELATED PROTEIN RAB
HS17904CCCH ZINC FINGER/TIS11-RELATED
HS17905NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
HS17906GAG-RELATED PROTEIN
HS1790730S/40S RIBOSOMAL PROTEIN S3
HS17908CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED
HS17909
HS17910NUCLEAR FACTOR NF-KAPPA-B PROTEIN
HS1791139S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL
HS17912FI23527P1
HS17913
HS17914LEUCINE-RICH REPEAT, ISOFORM F-RELATED
HS17915HISTONE H2A
HS17916TGF-BETA FAMILY
HS17917GEM-ASSOCIATED PROTEIN 7
HS17918CALCIUM BINDING PROTEIN
HS17919G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
HS17920REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17921TRANSPOSABLE ELEMENT-RELATED
HS179224F2 CELL-SURFACE ANTIGEN HEAVY CHAIN
HS17923RETICULON-LIKE PROTEIN
HS17924RHO FAMILY GTPASE
HS17925DRAB11-RELATED
HS17926RHO GTPASE-ACTIVATING PROTEIN 190
HS17927HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
HS17928TRANSMEMBRANE PROTEIN 160
HS17929EGL NINE HOMOLOG-RELATED
HS17930SODIUM/DICARBOXYLATE SYMPORTER-RELATED
HS17931FUKUTIN RELATED PROTEIN
HS17932STRIATIN
HS17933PROTEIN KINASE C, MU
HS17934BASIGIN RELATED
HS17935LYSOPHOSPHATIDIC ACID RECEPTOR 5/SPHINGOSYLPHOSPHORYLCHOLINE RECEPTOR
HS17936SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT GAMMA
HS17937ACROSIN-RELATED
HS17938
HS17939ACROSIN-RELATED
HS17940DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11
HS17941UNCHARACTERIZED DUF1167
HS17942DEDICATOR OF CYTOKINESIS DOCK
HS17943PROTEIN CBG26694
HS17944SHORT STATURE HOMEOBOX
HS17945SERINE/ARGININE-RELATED PROTEIN 53
HS17946MYELOID LEUKEMIA FACTOR
HS17947MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 29
HS17948SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT
HS17949MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS17950CHONDROLECTIN VARIANT CHODLFDELTAE.
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