About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS18051
HS18052PLATELET-DERIVED GROWTH FACTOR
HS18053REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18054REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18055DYNEIN HEAVY CHAIN
HS18056T-LYMPHOCYTE ACTIVATION ANTIGEN
HS18057FRIZZLED
HS18058
HS18059
HS18060CYSTEINE PROTEASE FAMILY C1-RELATED
HS18061METABOTROPIC GLUTAMATE RECEPTOR
HS18062NADPH OXIDASE
HS18063TYROSINASE FAMILY MEMBER
HS18064N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
HS18065NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED
HS18066NACHT, LRR AND CARD DOMAINS-CONTAINING
HS18067NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED
HS18068LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
HS18069RAGULATOR COMPLEX PROTEIN LAMTOR1
HS18070FRIZZLED
HS18071CATECHOL O-METHYLTRANSFERASE 1-RELATED
HS18072UNCHARACTERIZED
HS18073FOLATE RECEPTOR
HS18074SH2 DOMAIN-CONTAINING PROTEIN
HS18075HOMEOBOX PROTEIN ARISTALESS
HS18076ATP-DEPENDENT CLP PROTEASE
HS18077PROTEIN CBG11839-RELATED
HS18078PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
HS18079RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C
HS18080
HS18081CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS18082
HS18083CULLIN
HS18084FAM124 DOMAIN-CONTAINING PROTEIN-RELATED
HS18085MATRIX METALLOPROTEINASE
HS18086RNA BINDING PROTEIN
HS18087
HS18088NITRIC OXIDE SYNTHASE-RELATED
HS18089TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA
HS18090PHOSPHATIDYLGLYCEROL PHOSPHOLIPASE C
HS18091PROTEIN YIPPEE-LIKE CG15309-RELATED
HS18092BCL7 RELATED
HS18093TYROSINE-PROTEIN KINASE BAZ1B
HS18094
HS18095
HS18096FRIZZLED
HS18097COLLAGEN ALPHA
HS18098RAS GTPASE-ACTIVATING PROTEINS
HS18099PROTEIN CBG26694
HS18100RING BOX
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