About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS18201UNCHARACTERIZED
HS18202C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
HS18203UNCHARACTERIZED
HS18204MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
HS18205
HS18206ENOLASE
HS18207C-TYPE NATRIURETIC PEPTIDE
HS18208
HS18209STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4
HS18210CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA
HS18211
HS18212CST COMPLEX SUBUNIT CTC1
HS18213
HS18214
HS18215BICOID-INTERACTING PROTEIN RELATED
HS18216EPH RECEPTOR A5
HS18217METALLOPROTEASE TLDD
HS18218TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT
HS18219HIGH MOBILITY GROUP PROTEIN DSP1
HS18220
HS18221DIACYLGLYCEROL O-ACYLTRANSFERASE
HS18222TSC22 DOMAIN FAMILY PROTEIN 2
HS18223PHOSPHATIDYLINOSITOL KINASE
HS18224TRANSIENT RECEPTOR POTENTIAL CHANNEL
HS18225
HS18226DACHSHUND
HS18227
HS18228FERM DOMAIN CONTAINING PROTEIN
HS18229STERILE20-LIKE KINASE, ISOFORM B-RELATED
HS18230PALMITOYLTRANSFERASE ZDHHC16
HS18231INSULIN RECEPTOR SUBSTRATE
HS18232GUANYLYL CYCLASE
HS18233RAS-LIKE FAMILY MEMBER 11
HS18234UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS18235RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER
HS18236NANCE-HORAN SYNDROME PROTEIN
HS1823730S/40S RIBOSOMAL PROTEIN S4
HS18238MELANOCYTE SPECIFIC GENE RELATED CITED
HS18239HISTONE DEACETYLASE HDAC1-RELATED
HS18240PHOSPHORYLASE B KINASE REGULATORY SUBUNIT
HS18241LIVER EXPRESSED ANTIMICROBIAL PEPTIDE 2
HS18242TGF-BETA FAMILY
HS18243APICAL PROTEIN/SHROOM-RELATED
HS18244CHLORIDE CHANNEL PROTEIN
HS18245
HS18246
HS18247TUMOR NECROSIS FACTOR FAMILY MEMBER
HS18248
HS18249CYCLINS
HS18250TRANSMEMBRANE PROTEASE SERINE
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