About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS18251REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18252ACROSIN-RELATED
HS182535-HYDROXYTRYPTAMINE RECEPTOR
HS18254WASP-1
HS18255G-PROTEIN COUPLED RECEPTOR
HS18256PREFOLDIN SUBUNIT 3
HS18257RAB FAMILY
HS18258CLATHRIN ASSEMBLY PROTEIN
HS18259RAB FAMILY
HS18260DRAB11-RELATED
HS18261PREFOLDIN SUBUNIT 3
HS18262
HS18263
HS18264GRB2-ASSOCIATED-BINDING PROTEIN
HS18265COLLAGEN ALPHA
HS18266COLLAGEN ALPHA
HS18267ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
HS18268ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
HS18269BUTYROPHILIN
HS18270
HS18271FAM11A, B PROTEIN
HS18272CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81
HS18273
HS18274ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS
HS18275HAD SUPERFAMILY MEMBERS CMAS AND KDSC
HS18276E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS18277TRIOKINASE/FMN CYCLASE
HS18278SEC15
HS18279CYTOCHROME P450 26
HS18280FER-1-LIKE
HS18281
HS18282SMALL INTEGRAL MEMBRANE PROTEIN 13
HS18283
HS18284UNCHARACTERIZED
HS18285B-BOX DOMAIN CONTAINING
HS18286B-BOX DOMAIN CONTAINING
HS18287B-BOX DOMAIN CONTAINING
HS18288B-BOX DOMAIN CONTAINING
HS18289CEREBELLIN-RELATED
HS18290SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
HS18291N4BP1-RELATED
HS18292ADENYLATE CYCLASE TYPE 1
HS1829340S RIBOSOMAL PROTEIN S3A
HS18294ER MEMBRANE PROTEIN COMPLEX SUBUNIT 4
HS18295PHOSPHOLIPID ACYLTRANSFERASE
HS18296RIBOSOME BIOGENESIS PROTEIN NOP10
HS18297
HS18298SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
HS18299SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
HS18300AGAP000281-PA
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