About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS18401TRANSMEMBRANE 4 L6 FAMILY MEMBER 1-RELATED
HS18402CYTIDINE DEAMINASE
HS18403TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11
HS18404CLAUDIN
HS18405LD25575P
HS18406SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N
HS18407CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
HS18408PROTEIN EIGER
HS18409DIAMINE N-ACETYLTRANSFERASE
HS18410PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
HS18411SI:DKEY-19B23.7
HS18412ALPHA-MANNOSIDASE
HS18413SMALL INTEGRAL MEMBRANE PROTEIN 20
HS18414RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS
HS18415TBC1 DOMAIN FAMILY MEMBER 19
HS18416G-PROTEIN COUPLED RECEPTOR
HS18417STROMAL INTERACTION MOLECULE HOMOLOG
HS18418CADHERIN-87A
HS18419TRANSPOSABLE ELEMENT-RELATED
HS18420DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
HS18421RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C
HS18422BA1-643
HS18423BETA TRANSDUCIN-RELATED PROTEIN
HS18424REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18425
HS18426RELT-LIKE PROTEIN 1-RELATED
HS18427PERIOD CIRCADIAN PROTEIN
HS18428OVOCHYMASE-RELATED
HS18429SI:DKEY-19B23.12-RELATED
HS18430CALPAIN
HS18431
HS18432ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS18433NETRIN/LAMININ-RELATED
HS18434BREAKPOINT CLUSTER REGION PROTEIN BCR
HS18435DUF614 FAMILY PROTEIN-RELATED
HS18436G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS18437ACYL-COA DEHYDROGENASE
HS18438SEMAPHORIN
HS18439MEIOSIS 1 ARREST PROTEIN
HS18440DOCKING PROTEIN RELATED
HS18441BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN
HS18442POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 2
HS18443ALPHA KINASE/ELONGATION FACTOR 2 KINASE
HS18444CHAPERONIN
HS18445RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS
HS18446MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS18447REST COREPRESSOR COREST PROTEIN-RELATED
HS18448N-ALPHA-ACETYLTRANSFERASE 40
HS18449GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
HS18450
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