About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS17701ANTIGEN MLAA-22-RELATED
HS17702GLYOXALASE DOMAIN-CONTAINING PROTEIN 4
HS17703RRNA METHYLTRANSFERASE 3,
HS17704NUCLEOREDOXIN
HS1770542-9-9 PROTEIN-RELATED
HS17706UNCHARACTERIZED
HS17707PA-PL1 PHOSPHOLIPASE FAMILY
HS17708SI:CH211-196P9.1-RELATED
HS17709MULTIDRUG RESISTANCE PROTEIN
HS17710MULTIDRUG RESISTANCE PROTEIN
HS17711SOLUTE CARRIER FAMILY 13 MEMBER
HS17712WD REPEAT-CONTAINING PROTEIN 81
HS17713SERINE PROTEASE INHIBITOR, SERPIN
HS17714REPLICATION FACTOR A 1, RFA1
HS17715ANTIGEN BSP, PUTATIVE-RELATED
HS17716DIPHTHAMIDE BIOSYNTHESIS PROTEIN
HS17717REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17718ZINC FINGER PROTEIN
HS17719RIBOSOME BIOGENESIS PROTEIN
HS17720SERINE/THREONINE-PROTEIN KINASE TAO1-LIKE PROTEIN
HS17721GLIAL FACTOR NATURATION FACTOR
HS17722STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED
HS17723PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS17724SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS17725NKAP DOMAIN-CONTAINING 1
HS17726SEGMENT POLARITY PROTEIN DISHEVELLED
HS17727UNCHARACTERIZED
HS17728ACROSIN-RELATED
HS17729ZINC FINGER PROTEIN
HS17730CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
HS17731REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17732IG-LIKE DOMAIN-CONTAINING PROTEIN
HS17733CDC42 GTPASE-ACTIVATING PROTEIN
HS17734PROTEIN SIDEKICK
HS17735JUNCTIONAL ADHESION MOLECULE C
HS17736VACUOLAR PROTEIN SORTING 26 RELATED
HS17737THYMOCYTE NUCLEAR PROTEIN 1
HS17738ISOBUTYRYL-COA DEHYDROGENASE
HS17739ENDOTHELIAL CELL-SELECTIVE ADHESION MOLECULE
HS17740PROTEIN SIDEKICK
HS17741EPITHELIAL MEMBRANE PROTEIN-RELATED
HS17742
HS17743HEAT SHOCK PROTEIN 70KDA
HS17744ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS17745BITESIZE, ISOFORM I
HS17746ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS17747CLATHRIN ASSEMBLY PROTEIN
HS17748REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17749
HS17750CELL SURFACE GLYCOPROTEIN MUC18-RELATED
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