About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS17401PROTEIN NPAT
HS17402MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
HS17403TUBULIN
HS17404RIBOSOMAL PROTEIN S6 KINASE
HS17405SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED
HS17406GMP SYNTHASE-RELATED
HS17407CALCIUM-SENSING RECEPTOR-RELATED
HS17408HYPERKINETIC, ISOFORM M
HS17409REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17410TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT
HS17411POLY [ADP-RIBOSE] POLYMERASE
HS17412LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1
HS17413
HS17414CYCLIN
HS17415VEPH-A/MELTED
HS17416PENTRAXIN-RELATED PROTEIN PTX3
HS17417SEVEN TRANSMEMBRANE PROTEIN 1-RELATED
HS17418GOLGI INTEGRAL MEMBRANE PROTEIN 4
HS17419LEUCINE RICH REPEAT PROTEIN
HS17420SERINE PROTEASE INHIBITOR, SERPIN
HS17421TF-1 CELL APOPTOSIS RELATED PROTEIN-15
HS17422WD40 REPEAT DOMAIN 95
HS17423WD40 REPEAT DOMAIN 95
HS17424ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1
HS17425TRANSPOSABLE ELEMENT-RELATED
HS17426REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17427ALPHA-GLUCOSIDASE
HS17428REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17429TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS17430SLIT AND NTRK-LIKE PROTEIN 4-RELATED
HS17431ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS17432ACETYLCHOLINESTERASE
HS17433SI:CH211-196P9.1-RELATED
HS17434GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS17435MITOCHONDRIAL RIBOSOMAL PROTEIN S23
HS17436KRAB AND ZINC FINGER DOMAIN-CONTAINING
HS17437FAT ATYPICAL CADHERIN-RELATED
HS17438ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS17439REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17440ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS17441INWARD RECTIFIER POTASSIUM CHANNEL
HS17442PHD FINGER PROTEIN 12
HS17443PROTEIN CBR-CLEC-78
HS17444YALI0A06105P
HS17445PROTEIN CBG26694
HS17446PEROXISOMAL SARCOSINE OXIDASE
HS17447MYOSIN HEAVY CHAIN, NON-MUSCLE
HS17448GALECTIN
HS17449
HS17450SERINE-THREONINE PROTEIN KINASE
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