About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS17201
HS17202COATOMER SUBUNIT DELTA
HS17203PORPHOBILINOGEN DEAMINASE
HS17204ACETYLCHOLINESTERASE
HS17205
HS17206WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED
HS17207FI24210P1
HS17208B-BOX DOMAIN CONTAINING
HS17209
HS17210BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
HS17211TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
HS17212CT120 PROTEIN
HS17213GEM-ASSOCIATED PROTEIN 4
HS17214TAPASIN
HS17215CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS17216HOMEOBOX PROTEIN SEBOX
HS17217TRANSMEMBRANE PROTEIN 199
HS17218F-BOX ONLY PROTEIN 3
HS17219-
HS17220B-BOX DOMAIN CONTAINING
HS17221SH2-SH3 ADAPTOR PROTEIN-RELATED
HS1722214-3-3 PROTEIN
HS17223MYOSIN
HS17224-
HS17225PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
HS17226INOSITOL 5-PHOSPHATASE
HS17227
HS17228
HS17229ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
HS17230SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
HS17231THROMBOPOIETIN
HS17232CHORDIN
HS17233CHLORIDE CHANNEL PROTEIN 2
HS17234PROTEIN FAM131B-RELATED
HS17235HEAT SHOCK PROTEIN BETA-7-RELATED
HS17236EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
HS17237ALKALINE PHOSPHATASE
HS17238EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
HS1723926S PROTEASOME NON-ATPASE REGULATORY SUBUNIT
HS17240PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
HS17241SERINE PROTEASE INHIBITOR, SERPIN
HS17242REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17243LD41958P
HS17244DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 12
HS17245ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY
HS17246SECRETOGRANIN II
HS17247POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY E MEMBER 1, 3
HS17248LONG-CHAIN-FATTY-ACID--COA LIGASE
HS17249PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47
HS17250SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE
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