About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS17001HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN
HS17002KELCH PROTEIN
HS17003FAM13
HS17004
HS17005LDOC1 RELATED
HS17006REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17007SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS17008KINETOCHORE SCAFFOLD 1
HS17009EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED
HS17010ALCOHOL DEHYDROGENASE
HS17011
HS17012NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1
HS17013
HS17014PITUITARY HOMEOBOX HOMOLOG PTX1
HS17015FATTY ACID ACYL TRANSFERASE-RELATED
HS17016VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
HS17017SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS17018MYELIN PROTEOLIPID
HS17019SPERMATOGENESIS-ASSOCIATED 4-RELATED
HS17020SOWAH (DROSOPHILA) HOMOLOG
HS17021CYSTEINE PROTEASE FAMILY C1-RELATED
HS17022TRYPTOPHAN 2,3-DIOXYGENASE
HS17023TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
HS17024L-ASPARAGINASE
HS17025FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE
HS17026PLATELET-DERIVED GROWTH FACTOR
HS17027NEUROTRANSMITTER GATED ION CHANNEL
HS17028IONOTROPIC GLUTAMATE RECEPTOR
HS17029GOLGI-ASSOCIATED KINASE 1B-RELATED
HS17030TRANSMEMBRANE PROTEIN 144
HS17031GLYCOPROTEIN HORMONE RECEPTOR
HS17032ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE
HS17033PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
HS17034GENE, 17359-RELATED
HS17035CYTOSKELETON-ASSOCIATED PROTEIN 4
HS17036FOLLISTATIN-RELATED
HS17037DIHYDROPTERIDINE REDUCTASE
HS17038LIM DOMAIN-BINDING PROTEIN
HS17039UNCHARACTERIZED
HS17040PROMININ PROM PROTEIN
HS17041ANNEXIN
HS17042CYCLINS
HS17043BARDET-BIEDL SYNDROME 7 PROTEIN
HS17044TRANSMEMBRANE PROTEIN 33
HS17045HOMEOBOX PROTEIN ARISTALESS
HS17046LIM DOMAIN ONLY 7
HS17047CATECHOL O-METHYLTRANSFERASE 1-RELATED
HS17048NANOS PROTEIN
HS17049TRANSCRIPTION FACTOR LBX
HS17050RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT
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