About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS17151
HS17152GEMININ
HS17153PROTEIN IWS1 HOMOLOG
HS17154NACHT, LRR AND CARD DOMAINS-CONTAINING
HS17155NOP SEVEN ASSOCIATED PROTEIN 1
HS17156CENTAURIN/ARF
HS17157
HS17158SETA BINDING PROTEIN 1
HS17159P2Y PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS17160
HS17161
HS17162SUPPRESSOR OF TY 5
HS17163TP53-REGULATED INHIBITOR OF APOPTOSIS 1
HS17164SUPPRESSOR OF TY 5
HS17165RAS GTPASE-ACTIVATING PROTEINS
HS17166ZINC FINGER PROTEIN
HS17167
HS17168-
HS17169SINGLE-PASS MEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4
HS17170MITOGEN-ACTIVATED PROTEIN KINASE
HS17171PDZ DOMAIN CONTAINING PROTEIN
HS17172EF-HAND DOMAIN-CONTAINING PROTEIN D
HS17173UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS17174
HS17175MACROGLOBULIN / COMPLEMENT
HS17176MACROGLOBULIN / COMPLEMENT
HS17177REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS17178TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
HS17179TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
HS17180SORTILIN RELATED
HS17181TESTIS-EXPRESSED PROTEIN 12
HS17182
HS17183SUCCINATE DEHYDROGENASE
HS17184
HS17185FLAVIN MONOAMINE OXIDASE
HS17186SORTING NEXIN
HS17187
HS17188
HS17189ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS17190ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS17191AGAP004733-PA
HS17192
HS17193COLLAGEN ALPHA
HS17194RGD1562914
HS17195
HS17196
HS17197ANKYRIN REPEAT FAMILY A
HS17198ACTIVATING TRANSCRIPTION FACTOR ATF 4/5
HS17199MACROGLOBULIN / COMPLEMENT
HS17200PLECKSTRIN HOMOLOGY-LIKE DOMAIN, FAMILY B, MEMBER 3
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