About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS16951PROTEIN DIAPHANOUS
HS16952
HS16953NEUROTRANSMITTER GATED ION CHANNEL
HS16954ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE
HS1695560S RIBOSOMAL PROTEIN L36A/L44
HS16956TYROSINE-PROTEIN KINASE
HS16957
HS16958UNCHARACTERIZED
HS16959METHIONYL-TRNA SYNTHETASE
HS16960MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12
HS16961ATP-BINDING CASSETTE SUB-FAMILY C
HS16962ECTO-NOX DISULFIDE-THIOL EXCHANGER
HS16963B-BOX DOMAIN CONTAINING
HS16964ECTO-NOX DISULFIDE-THIOL EXCHANGER
HS16965REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS16966ANION EXCHANGE PROTEIN
HS16967GDNF RECEPTOR ALPHA
HS16968SET AND MYND DOMAIN-CONTAINING PROTEIN 5
HS16969SIDEROFLEXIN
HS16970RAB11-RELATED
HS16971BEN DOMAIN-CONTAINING PROTEIN 4
HS16972SHISA
HS16973PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
HS16974GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN 1
HS16975HUEL-CATION TRANSPORTER
HS16976GLUTATHIONE REDUCTASE
HS16977ZINC FINGER PROTEIN
HS16978SH2 DOMAIN CONTAINING PROTEIN
HS16979HEPARAN SULFATE SULFOTRANSFERASE
HS16980-
HS16981HOMEOBOX PROTEIN NKX
HS16982BIORIENTATION OF CHROMOSOMES IN CELL DIVISION 1 LIKE 1
HS16983SERINE/THREONINE-PROTEIN KINASE IAL-RELATED
HS16984F-BOX PROTEIN-LIKE
HS16985EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED
HS16986
HS16987DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
HS16988STROMAL ANTIGEN
HS16989GLYPICAN
HS16990INTEGRIN ALPHA
HS16991T-CELL RECEPTOR ALPHA CHAIN V REGION-RELATED
HS16992T-CELL RECEPTOR ALPHA CHAIN V REGION-RELATED
HS16993SLIT HOMOLOG
HS16994FIBROBLAST GROWTH FACTOR RECEPTOR
HS16995
HS16996TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
HS16997SPONDIN
HS16998C-TERMINAL-BINDING PROTEIN
HS16999MACROPHAGE ERYTHROBLAST ATTACHER-RELATED
HS17000HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN
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