About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS17101N-ACETYLGLUCOSAMINYLTRANSFERASE VI
HS17102CALRETICULIN AND CALNEXIN
HS17103MASTERMIND-LIKE
HS17104MICROSOMAL GLUTATHIONE S-TRANSFERASE
HS17105TOUCAN, ISOFORM A
HS17106HOMEOBOX PROTEIN EMX-RELATED
HS17107BETA-1,4-GALACTOSYLTRANSFERASE
HS17108TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
HS17109GEO07735P1-RELATED-RELATED
HS17110TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
HS17111TRYPTASE-RELATED
HS17112COAGULATION FACTOR
HS17113AUTOPHAGY PROTEIN 16-LIKE
HS17114AUTOPHAGY PROTEIN 16-LIKE
HS17115KUNITZ-TYPE PROTEASE INHIBITOR 2
HS17116TRANSMEMBRANE 4 L6 FAMILY MEMBER 1-RELATED
HS17117
HS17118BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
HS17119PNAS-3 RELATED
HS17120MATRIN 3/NUCLEAR PROTEIN 220-RELATED
HS17121BETA-1,4-GALACTOSYLTRANSFERASE
HS17122BETA-1,4-GALACTOSYLTRANSFERASE
HS17123
HS17124ZINC FINGER PROTEIN
HS17125NITRIC OXIDE-ASSOCIATED PROTEIN 1
HS17126NIPSNAP-RELATED
HS17127ZINC FINGER PROTEIN 142
HS17128NEURONAL TYROSINE-PHOSPHORYLATED PHOSPHOINOSITIDE-3-KINASE ADAPTER 2-RELATED
HS17129UNCHARACTERIZED
HS17130ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
HS17131ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
HS17132ANOCTAMIN
HS17133EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
HS17134CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING
HS17135
HS17136MITOGEN-ACTIVATED PROTEIN KINASE-BINDING PROTEIN 1
HS17137
HS17138ARRESTIN
HS17139MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT
HS17140OLFACTORY RECEPTOR 56B1-RELATED
HS17141G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS17142UNCHARACTERIZED
HS17143OCTANOYLTRANSFERASE
HS17144G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS17145DNA-DIRECTED RNA POLYMERASE II
HS17146ATP-BINDING TRANSPORT PROTEIN-RELATED
HS17147LEUKOTRIENE A-4 HYDROLASE
HS17148GM2 GANGLIOSIDE ACTIVATOR PROTEIN
HS17149EXOCYST COMPLEX COMPONENT SEC6-RELATED
HS17150INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
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