Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_43610-0.29 | |
| Bpl_scaf_43617-0.16 | |
| Bpl_scaf_43617-0.17 | |
| Bpl_scaf_43622-0.1 | |
| Bpl_scaf_43622-0.11 | |
| Bpl_scaf_43630-0.11 | SERINE/ARGININE-RELATED PROTEIN 53 |
| Bpl_scaf_43630-0.14 | STIMULATOR OF INTERFERON GENES PROTEIN |
| Bpl_scaf_43630-0.15 | RHOMBOID-RELATED PROTEIN |
| Bpl_scaf_43638-0.11 | FATTY ACID SYNTHASE |
| Bpl_scaf_43638-0.18 | PATCHED-RELATED |
| Bpl_scaf_43654-0.2 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| Bpl_scaf_43654-0.6 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_43662-0.2 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_43673-0.20 | |
| Bpl_scaf_43673-0.21 | |
| Bpl_scaf_43673-0.22 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_43673-0.24 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_43673-0.6 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_43684-0.8 | PROTEIN STAR |
| Bpl_scaf_43684-0.9 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Bpl_scaf_43691-0.0 | |
| Bpl_scaf_43691-0.36 | |
| Bpl_scaf_43691-0.5 | |
| Bpl_scaf_43691-0.7 | |
| Bpl_scaf_43706-0.14 | PHOSPHATIDYLGLYCEROL PHOSPHOLIPASE C |
| Bpl_scaf_43706-0.17 | |
| Bpl_scaf_43706-0.29 | PRE-MRNA-PROCESSING FACTOR 19 |
| Bpl_scaf_43706-0.3 | |
| Bpl_scaf_43706-0.30 | NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] |
| Bpl_scaf_43706-0.31 | |
| Bpl_scaf_43706-0.8 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_43706-0.9 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_43717-0.2 | F-BOX ONLY PROTEIN |
| Bpl_scaf_43729-0.17 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_43729-0.21 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_43729-0.24 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_43729-0.30 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_43743-0.2 | |
| Bpl_scaf_43743-1.17 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_43743-1.18 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_43743-1.19 | |
| Bpl_scaf_43743-1.20 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_43751-0.3 | |
| Bpl_scaf_43756-0.2 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_43756-0.7 | |
| Bpl_scaf_43756-1.0 | |
| Bpl_scaf_43761-0.5 | |
| Bpl_scaf_43761-1.1 | |
| Bpl_scaf_43763-0.2 | |
| Bpl_scaf_43770-0.4 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
