About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_43026-0.6
Bpl_scaf_43037-0.0
Bpl_scaf_43037-0.23
Bpl_scaf_43037-0.24
Bpl_scaf_43037-0.25LEUCINE ZIPPER PROTEIN 4-RELATED
Bpl_scaf_43037-0.29SCAVENGER RECEPTOR CLASS F
Bpl_scaf_43037-0.3
Bpl_scaf_43037-0.31
Bpl_scaf_43037-0.32
Bpl_scaf_43037-0.4
Bpl_scaf_43037-0.6
Bpl_scaf_43037-0.8
Bpl_scaf_43051-0.3
Bpl_scaf_43051-1.0SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Bpl_scaf_43051-1.5TOLL-LIKE RECEPTOR
Bpl_scaf_43051-1.8SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Bpl_scaf_43064-0.0
Bpl_scaf_43064-0.8
Bpl_scaf_43064-0.9
Bpl_scaf_43064-1.7INTEGRIN ALPHA
Bpl_scaf_43074-0.0
Bpl_scaf_43074-0.3
Bpl_scaf_43074-1.11
Bpl_scaf_43074-1.13ALPHA-MANNOSIDASE
Bpl_scaf_43074-1.7ZINC FINGER PROTEIN
Bpl_scaf_43082-1.13
Bpl_scaf_43082-1.14
Bpl_scaf_43082-1.16INHIBITOR OF APOPTOSIS
Bpl_scaf_43083-0.2
Bpl_scaf_43088-0.0
Bpl_scaf_43088-0.6TRANSCRIPTION FACTOR SPT20 HOMOLOG
Bpl_scaf_43088-1.10PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_43088-1.13UNCHARACTERIZED PROTEIN YBCL-RELATED
Bpl_scaf_43088-1.17
Bpl_scaf_43088-1.37SEC3/SYNTAXIN-RELATED
Bpl_scaf_43088-1.8BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_43094-0.0
Bpl_scaf_43097-1.2NEUROPHYSIN
Bpl_scaf_43097-1.2126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4
Bpl_scaf_43097-1.22DDB1- AND CUL4-ASSOCIATED FACTOR 10
Bpl_scaf_43097-1.23RCC1 DOMAIN-CONTAINING PROTEIN 1
Bpl_scaf_43097-1.3
Bpl_scaf_43097-1.7UNCHARACTERIZED
Bpl_scaf_43098-0.3RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_43108-0.16FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_43108-0.17FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_43108-0.29FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_43108-0.30
Bpl_scaf_43108-1.1
Bpl_scaf_43108-1.8CT120 PROTEIN
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