About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_43277-3.9TYROSINE-PROTEIN KINASE
Bpl_scaf_43278-0.2
Bpl_scaf_43283-0.7
Bpl_scaf_43283-0.8
Bpl_scaf_43284-0.1
Bpl_scaf_43285-0.2PROTEASE M14 CARBOXYPEPTIDASE
Bpl_scaf_43287-0.4
Bpl_scaf_43288-0.0INTERFERON-INDUCIBLE GTPASE
Bpl_scaf_43288-1.11SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1
Bpl_scaf_43288-1.12BONUS, ISOFORM C-RELATED
Bpl_scaf_43288-1.14CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
Bpl_scaf_43288-1.21SEPIAPTERIN REDUCTASE
Bpl_scaf_43288-1.22CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_43288-1.9
Bpl_scaf_43288-2.0CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_43288-3.10ZINC FINGER PROTEIN
Bpl_scaf_43288-3.11-
Bpl_scaf_43288-3.12UNCHARACTERIZED
Bpl_scaf_43288-3.14-
Bpl_scaf_43288-3.24FMRFAMIDE RECEPTOR-RELATED
Bpl_scaf_43289-0.5CYTOCHROME P450 FAMILY 3
Bpl_scaf_43311-0.6
Bpl_scaf_43329-0.8
Bpl_scaf_43329-0.9
Bpl_scaf_43339-0.8PLEXIN
Bpl_scaf_43350-0.5SCAVENGER RECEPTOR CLASS F
Bpl_scaf_43360-0.0PROTEIN STAR
Bpl_scaf_4338-0.0
Bpl_scaf_43400-0.10LEUCYL-TRNA SYNTHETASE
Bpl_scaf_43400-0.9LEUCYL-TRNA SYNTHETASE
Bpl_scaf_43413-0.2COLLAGEN ALPHA
Bpl_scaf_43445-1.3
Bpl_scaf_43445-2.12NOTCH LIGAND FAMILY MEMBER
Bpl_scaf_43445-2.16CRUMBS FAMILY MEMBER
Bpl_scaf_43445-2.17CRUMBS FAMILY MEMBER
Bpl_scaf_43445-3.17CRUMBS FAMILY MEMBER
Bpl_scaf_43445-4.2
Bpl_scaf_43450-0.0
Bpl_scaf_43450-0.6UNCHARACTERIZED
Bpl_scaf_43450-0.8UBIQUINONE BIOSYNTHESIS PROTEIN
Bpl_scaf_43465-0.5POLYCYSTIN-1
Bpl_scaf_43466-1.11ARRESTIN DOMAIN-CONTAINING PROTEIN D
Bpl_scaf_43466-1.21CAMP-BINDING PROTEIN 1-RELATED
Bpl_scaf_43466-1.22CAMP-BINDING PROTEIN 1-RELATED
Bpl_scaf_43466-2.13UNCHARACTERIZED
Bpl_scaf_43466-2.7
Bpl_scaf_43466-2.8CAMP-BINDING PROTEIN 1-RELATED
Bpl_scaf_43466-3.2
Bpl_scaf_43466-3.4UNCHARACTERIZED
Bpl_scaf_43466-4.5UNCHARACTERIZED
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