About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_42798-0.9PUTATIVE-RELATED
Bpl_scaf_42811-0.5
Bpl_scaf_42823-0.13TRANSPOSON
Bpl_scaf_42823-0.16CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_42823-0.21CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_42840-0.10
Bpl_scaf_42840-0.11
Bpl_scaf_42840-0.15
Bpl_scaf_42840-0.17THROMBOSPONDIN TYPE I DOMAIN-CONTAINING 1
Bpl_scaf_4285-0.12PEPTIDASE M20
Bpl_scaf_4285-0.13PEPTIDASE M20
Bpl_scaf_42851-0.6
Bpl_scaf_42851-0.7GLUTAMINASE
Bpl_scaf_42857-0.0
Bpl_scaf_42865-0.12G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_42865-0.13-
Bpl_scaf_42865-0.18
Bpl_scaf_42865-0.23WD40 PROTEIN CIAO1
Bpl_scaf_42876-0.11
Bpl_scaf_42876-0.6OS10G0105400 PROTEIN
Bpl_scaf_42876-0.7
Bpl_scaf_42881-0.1
Bpl_scaf_42922-0.20SRCR DOMAIN-CONTAINING PROTEIN
Bpl_scaf_42922-0.22UNCHARACTERIZED
Bpl_scaf_42922-0.23
Bpl_scaf_42933-0.1
Bpl_scaf_42943-0.17BETA-1,4-GALACTOSYLTRANSFERASE
Bpl_scaf_42943-0.2EPIMERASE-RELATED
Bpl_scaf_42943-0.21CADHERIN-87A
Bpl_scaf_42943-0.5
Bpl_scaf_42943-0.8EPIMERASE-RELATED
Bpl_scaf_42954-0.29
Bpl_scaf_42954-0.3E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Bpl_scaf_42954-0.30NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_42954-0.4NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_42954-1.12NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_42954-2.15RETINOL DEHYDROGENASE
Bpl_scaf_42954-2.9PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
Bpl_scaf_42954-3.16UNCHARACTERIZED
Bpl_scaf_42954-3.17GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88
Bpl_scaf_42954-3.18PA-PL1 PHOSPHOLIPASE FAMILY
Bpl_scaf_42954-3.26E3 UBIQUITIN-PROTEIN LIGASE RNF103
Bpl_scaf_42954-4.1HOMEOBOX PROTEIN HMX
Bpl_scaf_42954-5.4RHO FAMILY GTPASE
Bpl_scaf_42954-5.5CORTACTIN AND DREBRIN
Bpl_scaf_42954-6.12SH3 MULTIPLE DOMAIN
Bpl_scaf_42954-6.14
Bpl_scaf_42954-6.2
Bpl_scaf_42954-6.7
Bpl_scaf_42960-0.5SODIUM/CHLORIDE DEPENDENT TRANSPORTER
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