Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_42312-4.20 | - |
| Bpl_scaf_42312-4.21 | |
| Bpl_scaf_42312-4.22 | SERINE-THREONINE PROTEIN KINASE |
| Bpl_scaf_42312-5.4 | FORKHEAD BOX PROTEIN |
| Bpl_scaf_42312-5.6 | FORKHEAD BOX P, ISOFORM C |
| Bpl_scaf_42312-7.2 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_42312-8.11 | |
| Bpl_scaf_42312-8.12 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_42312-8.8 | SISTER CHROMATID COHESION PROTEIN DCC1-RELATED |
| Bpl_scaf_42322-1.17 | METHYLTRANSFERASE TYPE 11 |
| Bpl_scaf_42322-1.66 | SI:CH211-266K2.1 |
| Bpl_scaf_42322-1.68 | COLLAGEN ALPHA |
| Bpl_scaf_42322-1.7 | COLLAGEN ALPHA |
| Bpl_scaf_42322-1.70 | |
| Bpl_scaf_42335-0.5 | NEUTROPHIL CYTOSOLIC FACTOR 2, NEUTROPHIL NADPH OXIDASE FACTOR 2 |
| Bpl_scaf_42335-0.6 | F-BOX/WD REPEAT-CONTAINING PROTEIN 5 |
| Bpl_scaf_42335-1.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_42335-1.11 | DOPAMINE BETA HYDROXYLASE RELATED |
| Bpl_scaf_42335-1.13 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_42335-1.15 | CELL DIVISION PROTEIN KINASE |
| Bpl_scaf_42335-1.3 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_42343-0.10 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28 |
| Bpl_scaf_42343-0.11 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
| Bpl_scaf_42343-0.6 | CUBILIN |
| Bpl_scaf_42343-1.2 | CUBILIN |
| Bpl_scaf_42343-1.6 | |
| Bpl_scaf_42343-2.2 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_4235-0.7 | SERINE-THREONINE PROTEIN KINASE |
| Bpl_scaf_4235-0.8 | CHRONIC MYELOGENOUS LEUKEMIA TUMOR ANTIGEN 66 |
| Bpl_scaf_4235-0.9 | EXPRESSED PROTEIN |
| Bpl_scaf_4235-1.4 | NF-KAPPA-B INHIBITOR ALPHA |
| Bpl_scaf_4235-1.7 | |
| Bpl_scaf_42351-0.2 | PROPERDIN |
| Bpl_scaf_42352-0.2 | |
| Bpl_scaf_42353-0.0 | |
| Bpl_scaf_42354-0.2 | |
| Bpl_scaf_42354-1.6 | EXPRESSED PROTEIN |
| Bpl_scaf_42354-2.10 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_42354-2.9 | TITIN |
| Bpl_scaf_42357-0.0 | |
| Bpl_scaf_42358-0.4 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_4236-0.5 | ATP SYNTHASE GAMMA-RELATED |
| Bpl_scaf_42362-0.3 | |
| Bpl_scaf_42362-0.4 | |
| Bpl_scaf_42362-0.8 | |
| Bpl_scaf_42362-0.9 | IONOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_42362-2.2 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_42364-0.2 | |
| Bpl_scaf_4237-0.2 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_4237-1.0 | FMRFAMIDE RECEPTOR-RELATED |
