Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_42196-0.8 | ALPHA-N-ACETYLGLUCOSAMINIDASE |
| Bpl_scaf_42196-0.9 | TYROSINE-PROTEIN KINASE |
| Bpl_scaf_42207-0.18 | |
| Bpl_scaf_42210-0.12 | |
| Bpl_scaf_42210-0.13 | UNCHARACTERIZED |
| Bpl_scaf_42210-0.14 | ANKYRIN REPEAT PROTEIN |
| Bpl_scaf_42210-0.16 | |
| Bpl_scaf_42210-0.20 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42210-0.21 | DNA POLYMERASE IOTA |
| Bpl_scaf_42210-0.24 | CEROID-LIPOFUSCINOSIS NEURONAL PROTEIN 6 |
| Bpl_scaf_42210-0.52 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_42210-0.9 | |
| Bpl_scaf_42221-0.10 | TYROSINE-PROTEIN KINASE HOPSCOTCH |
| Bpl_scaf_42221-0.11 | SPIRE |
| Bpl_scaf_42221-0.15 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Bpl_scaf_42234-0.18 | VINCULIN |
| Bpl_scaf_42234-0.19 | PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN |
| Bpl_scaf_42234-0.20 | ORIGIN RECOGNITION COMPLEX SUBUNIT 2 |
| Bpl_scaf_42247-0.1 | |
| Bpl_scaf_42247-0.7 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_42247-0.8 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_42269-0.10 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42269-0.13 | |
| Bpl_scaf_42281-0.19 | MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN |
| Bpl_scaf_42281-1.18 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42281-1.19 | |
| Bpl_scaf_42287-0.0 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_42287-1.16 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_42287-1.3 | |
| Bpl_scaf_42287-1.4 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_42287-1.8 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_42293-0.0 | |
| Bpl_scaf_42297-1.4 | |
| Bpl_scaf_42297-1.6 | |
| Bpl_scaf_42303-0.0 | CARBOXYLIC ESTER HYDROLASE |
| Bpl_scaf_42303-1.12 | |
| Bpl_scaf_42303-1.13 | EG:80H7.2 PROTEIN |
| Bpl_scaf_42303-1.14 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
| Bpl_scaf_42303-1.15 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
| Bpl_scaf_42303-1.25 | |
| Bpl_scaf_42303-1.28 | |
| Bpl_scaf_42312-0.0 | |
| Bpl_scaf_42312-1.7 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
| Bpl_scaf_42312-1.8 | HISTONE DEACETYLASE HDAC1-RELATED |
| Bpl_scaf_42312-2.4 | |
| Bpl_scaf_42312-2.7 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_42312-2.8 | HISTONE DEACETYLASE-LIKE PROTEIN |
| Bpl_scaf_42312-4.14 | UNCHARACTERIZED |
| Bpl_scaf_42312-4.16 | |
| Bpl_scaf_42312-4.17 |
