About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_42542-4.0
Bpl_scaf_42542-4.15SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
Bpl_scaf_42542-4.16
Bpl_scaf_42542-4.6HELICASE WITH DEATH DOMAIN-RELATED
Bpl_scaf_42542-5.0PROTEIN CBG23764
Bpl_scaf_42542-5.15
Bpl_scaf_42545-0.3CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8
Bpl_scaf_42548-0.0
Bpl_scaf_42548-0.1
Bpl_scaf_42548-0.2
Bpl_scaf_42548-0.3
Bpl_scaf_4255-0.0
Bpl_scaf_42552-0.10TUMOR NECROSIS FACTOR FAMILY MEMBER
Bpl_scaf_42552-0.16
Bpl_scaf_42552-0.3NINJURIN-RELATED
Bpl_scaf_42552-0.4G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_42552-2.3
Bpl_scaf_42552-3.7TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
Bpl_scaf_42552-3.9
Bpl_scaf_42557-0.4RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_42560-0.1
Bpl_scaf_42563-1.13INTEGRIN BETA SUBUNIT
Bpl_scaf_42563-1.15SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
Bpl_scaf_42563-3.17
Bpl_scaf_42563-3.18
Bpl_scaf_42563-3.19KRAB AND ZINC FINGER DOMAIN-CONTAINING
Bpl_scaf_42563-3.22SH3 DOMAIN-BINDING PROTEIN 5
Bpl_scaf_42563-3.48
Bpl_scaf_42563-3.55EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Bpl_scaf_42563-3.59LD33804P
Bpl_scaf_42563-3.6MULTICOPPER OXIDASE-RELATED
Bpl_scaf_42564-0.0
Bpl_scaf_42566-0.2
Bpl_scaf_42567-0.3CDC45-RELATED PROTEIN
Bpl_scaf_42569-0.1
Bpl_scaf_42571-0.1
Bpl_scaf_42574-0.0BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_42574-0.1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_42574-0.8REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_42574-1.15ZINC FINGER PROTEIN
Bpl_scaf_42574-1.19ZINC FINGER PROTEIN 142
Bpl_scaf_42574-1.21ZINC FINGER PROTEIN
Bpl_scaf_42574-1.9
Bpl_scaf_42574-2.0
Bpl_scaf_42574-2.2
Bpl_scaf_42574-3.6MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_42576-0.2KATANIN P80 SUBUNIT
Bpl_scaf_42578-0.0
Bpl_scaf_42579-0.4
Bpl_scaf_42581-0.0
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