Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_42583-0.0 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_42584-0.10 | |
| Bpl_scaf_42584-0.18 | MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN |
| Bpl_scaf_42584-0.19 | |
| Bpl_scaf_42584-0.20 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42584-1.5 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42584-1.9 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42584-2.13 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42584-2.14 | |
| Bpl_scaf_42584-2.15 | |
| Bpl_scaf_42584-3.16 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42584-3.26 | PARANEOPLASTIC ANTIGEN |
| Bpl_scaf_42584-3.27 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42584-3.30 | |
| Bpl_scaf_42584-3.32 | |
| Bpl_scaf_42584-3.35 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42584-3.36 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_42584-3.37 | MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN |
| Bpl_scaf_4259-0.1 | MUCIN 4-RELATED |
| Bpl_scaf_4259-0.12 | MUCIN 4-RELATED |
| Bpl_scaf_4259-0.13 | |
| Bpl_scaf_4259-2.11 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Bpl_scaf_4259-2.3 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Bpl_scaf_4259-2.7 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Bpl_scaf_4259-3.18 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_4259-3.22 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_4259-3.23 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Bpl_scaf_4259-3.33 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_4259-3.35 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_42599-0.4 | TITIN |
| Bpl_scaf_426-0.16 | |
| Bpl_scaf_426-0.8 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_426-0.9 | |
| Bpl_scaf_42610-3.4 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Bpl_scaf_42610-4.10 | FATTY ACID DESATURASE 2 |
| Bpl_scaf_42610-4.19 | OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED |
| Bpl_scaf_42610-4.5 | |
| Bpl_scaf_42610-4.6 | |
| Bpl_scaf_42610-4.8 | G-PROTEIN COUPLED RECEPTOR 158-RELATED |
| Bpl_scaf_42617-0.6 | HELICASE WITH DEATH DOMAIN-RELATED |
| Bpl_scaf_4263-0.2 | THYROTROPH EMBRYONIC FACTOR RELATED |
| Bpl_scaf_42634-0.1 | REGULATOR OF G PROTEIN SIGNALING |
| Bpl_scaf_4264-0.1 | |
| Bpl_scaf_4264-0.3 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_42640-0.26 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_42640-0.5 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_4265-0.2 | PTD012 PROTEIN |
| Bpl_scaf_42650-1.7 | UNCHARACTERIZED |
| Bpl_scaf_42650-2.2 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_42650-3.6 | PROPERDIN |
