Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_018046-T1 | |
LLU|FUN_018047-T1 | MUCIN 4-RELATED |
LLU|FUN_018048-T1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
LLU|FUN_018049-T1 | |
LLU|FUN_018050-T1 | |
LLU|FUN_018051-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_018052-T1 | |
LLU|FUN_018053-T1 | |
LLU|FUN_018054-T1 | |
LLU|FUN_018055-T1 | DEDICATOR OF CYTOKINESIS DOCK |
LLU|FUN_018056-T1 | DEDICATOR OF CYTOKINESIS DOCK |
LLU|FUN_018057-T1 | CALPAIN |
LLU|FUN_018058-T1 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
LLU|FUN_018059-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_018060-T1 | NADP-SPECIFIC ISOCITRATE DEHYDROGENASE |
LLU|FUN_018061-T1 | |
LLU|FUN_018062-T1 | |
LLU|FUN_018063-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
LLU|FUN_018064-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
LLU|FUN_018065-T1 | |
LLU|FUN_018066-T1 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
LLU|FUN_018067-T1 | |
LLU|FUN_018068-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP3 |
LLU|FUN_018069-T1 | |
LLU|FUN_018070-T1 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
LLU|FUN_018071-T1 | |
LLU|FUN_018072-T1 | |
LLU|FUN_018073-T1 | - |
LLU|FUN_018074-T1 | FAST LEU-RICH DOMAIN-CONTAINING |
LLU|FUN_018075-T1 | 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N |
LLU|FUN_018076-T1 | |
LLU|FUN_018077-T1 | |
LLU|FUN_018078-T1 | |
LLU|FUN_018079-T1 | |
LLU|FUN_018080-T1 | |
LLU|FUN_018081-T1 | |
LLU|FUN_018082-T1 | |
LLU|FUN_018083-T1 | |
LLU|FUN_018084-T1 | EXPORTIN-T/LOS1 |
LLU|FUN_018085-T1 | ADENYLATE CYCLASE TYPE 1 |
LLU|FUN_018086-T1 | |
LLU|FUN_018087-T1 | ADENYLATE CYCLASE TYPE 1 |
LLU|FUN_018088-T1 | |
LLU|FUN_018089-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
LLU|FUN_018090-T1 | |
LLU|FUN_018091-T1 | OS10G0105400 PROTEIN |
LLU|FUN_018092-T1 | OS10G0105400 PROTEIN |
LLU|FUN_018093-T1 | |
LLU|FUN_018094-T1 | |
LLU|FUN_018095-T1 | UNCHARACTERIZED |