Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_017896-T1 | RNA RECOGNITION MOTIF-CONTAINING |
LLU|FUN_017897-T1 | |
LLU|FUN_017898-T1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
LLU|FUN_017899-T1 | UNCHARACTERIZED |
LLU|FUN_017900-T1 | ALANINE AMINOTRANSFERASE |
LLU|FUN_017901-T1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
LLU|FUN_017902-T1 | MDM2-BINDING PROTEIN |
LLU|FUN_017903-T1 | BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN |
LLU|FUN_017904-T1 | LYSINE-SPECIFIC DEMETHYLASE |
LLU|FUN_017905-T1 | |
LLU|FUN_017906-T1 | |
LLU|FUN_017907-T1 | GPI TRANSAMIDASE COMPONENT PIG-T-RELATED |
LLU|FUN_017908-T1 | TRANSMEMBRANE PROTEIN 64 |
LLU|FUN_017909-T1 | SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 |
LLU|FUN_017910-T1 | UNCHARACTERIZED |
LLU|FUN_017911-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_017912-T1 | BASIGIN RELATED |
LLU|FUN_017913-T1 | |
LLU|FUN_017914-T1 | |
LLU|FUN_017915-T1 | |
LLU|FUN_017916-T1 | |
LLU|FUN_017917-T1 | |
LLU|FUN_017918-T1 | |
LLU|FUN_017919-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_017920-T1 | |
LLU|FUN_017921-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_017922-T1 | |
LLU|FUN_017923-T1 | |
LLU|FUN_017924-T1 | |
LLU|FUN_017925-T1 | |
LLU|FUN_017926-T1 | |
LLU|FUN_017927-T1 | |
LLU|FUN_017928-T1 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
LLU|FUN_017929-T1 | RETINOBLASTOMA BINDING PROTEIN 8 |
LLU|FUN_017930-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
LLU|FUN_017931-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
LLU|FUN_017932-T1 | |
LLU|FUN_017933-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
LLU|FUN_017934-T1 | |
LLU|FUN_017935-T1 | |
LLU|FUN_017936-T1 | |
LLU|FUN_017937-T1 | ARGINASE/AGMATINASE |
LLU|FUN_017938-T1 | |
LLU|FUN_017939-T1 | |
LLU|FUN_017940-T1 | ARGINASE/AGMATINASE |
LLU|FUN_017941-T1 | |
LLU|FUN_017942-T1 | RGD1565685 PROTEIN |
LLU|FUN_017943-T1 | |
LLU|FUN_017944-T1 | ZINC FINGER PROTEIN |
LLU|FUN_017945-T1 | REMODELING AND SPACING FACTOR 1 |