About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS01501UNCHARACTERIZED
HS01502SOLUTE CARRIER FAMILY 39
HS01503DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
HS01504EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C
HS01505PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
HS01506PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
HS01507FAS APOPTOTIC INHIBITORY MOLECULE FAIM
HS01508CONNEXIN
HS01509GLYCOSYL HYDROLASE
HS01510HISTONE DEACETYLASE 9-RELATED
HS01511BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS01512
HS01513BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS01514TRAF3-INTERACTING PROTEIN 1
HS01515EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
HS01516REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS01517G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS01518G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS01519G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS01520G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS01521G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS01522METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN
HS01523METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN
HS01524UBIQUITIN-CONJUGATING ENZYME E2
HS01525RECEPTOR ACTIVITY MODIFYING PROTEIN RAMP
HS01526MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
HS01527CYCLIN
HS015282-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE
HS01529TRANSMEMBRANE PROTEIN 163
HS01530PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN
HS01531CYCLIN Y, ISOFORM A
HS01532
HS01533FRIZZLED
HS01534CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN B
HS01535KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS01536TGF-BETA FAMILY
HS01537EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1
HS01538CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
HS01539RAI16 PROTEIN-RELATED
HS01540
HS01541E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
HS01542MYOTROPHIN
HS01543BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
HS01544BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
HS01545UNCHARACTERIZED
HS01546
HS01547SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1
HS01548SOLUTE CARRIER FAMILY 22 MEMBER
HS01549DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN
HS01550HEMOGLOBIN FAMILY MEMBER
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