About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS01401NEUREXOPHILIN
HS01402PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
HS01403KALLIKREIN-RELATED
HS01404DRAB5-RELATED
HS01405EG:EG0003.4 PROTEIN-RELATED
HS01406TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT
HS01407LETHAL 2 GIANT LARVAE PROTEIN
HS01408KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED
HS01409TESTIS DEVELOPMENT PROTEIN PRTD
HS01410NUCLEOLUS AND NEURAL PROGENITOR PROTEIN
HS01411RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS01412LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
HS01413BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN
HS01414MYOSIN
HS01415MOTOR NEURON AND PANCREAS HOMEOBOX PROTEIN
HS01416CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 65
HS01417WNT RELATED
HS01418WNT RELATED
HS01419CYCLIN DEPENDANT KINASE-5 ACTIVATOR
HS01420BETA/GAMMA CRYSTALLIN
HS01421
HS01422OROTATE PHOSPHORIBOSYLTRANSFERASE
HS01423TENASCIN
HS01424-
HS01425PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
HS01426PARTITIONING DEFECTIVE 3 RELATED
HS01427F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
HS014284.1 G PROTEIN
HS01429TYROSINE-PROTEIN PHOSPHATASE
HS01430UNCHARACTERIZED
HS01431RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS01432PDF RECEPTOR-LIKE PROTEIN-RELATED
HS01433MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
HS01434PDF RECEPTOR-LIKE PROTEIN-RELATED
HS01435TRANSMEMBRANE PROTEIN 237
HS01436ABL INTERACTOR FAMILY MEMBER
HS01437UNCHARACTERIZED
HS01438FIMBRIN/PLASTIN
HS01439GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE
HS01440
HS01441CAMK FAMILY PROTEIN KINASE
HS01442INTEGRAL TRANSMEMBRANE PROTEIN 2
HS01443MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4
HS01444PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
HS01445SUCCINYL-COA SYNTHETASE BETA CHAIN
HS014465-HYDROXYTRYPTAMINE RECEPTOR
HS01447S-FORMYLGLUTATHIONE HYDROLASE
HS01448-
HS01449PHOX (PX) DOMAIN-CONTAINING PROTEIN
HS01450HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
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