About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS01451G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS01452ADP RIBOSYLATION FACTOR-RELATED
HS01453SH3 DOMAIN-CONTAINING PROTEIN
HS01454CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS01455DUAL SPECIFICITY PROTEIN PHOSPHATASE 19
HS01456FRIZZLED
HS01457DNAJ HOMOLOG SUBFAMILY C MEMBER 10
HS01458NUCLEOPORIN NUP35
HS01459ATP-DEPENDENT RNA HELICASE DBP3
HS01460SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
HS01461
HS01462MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
HS01463P2Y PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS01464AMINE OXIDASE
HS01465NORRIN
HS01466EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
HS01467FUN14 DOMAIN CONTAINING
HS01468LYSINE-SPECIFIC DEMETHYLASE
HS01469COILED-COIL DOMAIN-CONTAINING PROTEIN 80
HS01470
HS01471F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
HS01472REGULATOR OF CELL CYCLE RGCC
HS01473VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8
HS01474DIACYLGLYCEROL KINASE
HS01475A KINASE ANCHOR PROTEIN
HS01476TUMOR NECROSIS FACTOR FAMILY MEMBER
HS01477LDOC1 RELATED
HS01478EPITHELIAL-STROMAL INTERACTION PROTEIN 1
HS01479NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
HS01480VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
HS01481ARMADILLO REPEAT-CONTAINING PROTEIN 8
HS01482RNA LARIAT DEBRANCHING ENZYME
HS01483-
HS01484DNA-BINDING PROTEIN SATB FAMILY MEMBER
HS01485
HS01486PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
HS01487RAFTLIN-RELATED
HS01488MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
HS01489SUSHI DOMAIN-CONTAINING PROTEIN
HS01490ANTIGEN BSP, PUTATIVE-RELATED
HS01491KH DOMAIN CONTAINING RNA BINDING PROTEIN
HS01492REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS01493COLLAGEN ALPHA
HS01494SI:DKEY-31G6.6
HS01495SI:DKEY-31G6.6
HS01496DULLARD PROTEIN PHOSPHATASE
HS01497IMMUNOGLOBULIN
HS01498CELL ADHESION MOLECULE
HS01499OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED
HS01500CAVIN
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