About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS01201CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN
HS01202NEUROTRANSMITTER GATED ION CHANNEL
HS01203CHIMERIN FAMILY MEMBER
HS01204DEP DOMAIN PROTEIN
HS01205SECERNIN
HS01206CBF1 INTERACTING COREPRESSOR CIR
HS01207KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS01208KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS01209OS05G0300700 PROTEIN
HS01210SERINE-THREONINE PROTEIN KINASE
HS01211GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS01212NEURABIN
HS01213PYRUVATE DEHYDROGENASE KINASE
HS01214NUCLEAR PORE GLYCOPROTEIN P62-RELATED
HS01215INTEGRIN ALPHA
HS01216HOMEOBOX PROTEIN
HS01217HOMEOBOX PROTEIN
HS01218REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS01219HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT
HS01220MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED
HS01221DYNEIN INTERMEDIATE CHAIN
HS01222CYTOCHROME B561-RELATED
HS01223
HS01224DDB1- AND CUL4-ASSOCIATED FACTOR 17
HS01225METHYLTRANSFERASE-RELATED
HS01226MIXED LINEAGE PROTEIN KINASE
HS01227GOLGI REASSEMBLY STACKING PROTEIN GRASP
HS01228GLUTAMATE DECARBOXYLASE-RELATED
HS01229KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS01230AGAP011099-PA
HS01231UBIQUITIN LIGASE E3 ALPHA-RELATED
HS01232UNCHARACTERIZED
HS01233LUPUS LA PROTEIN-RELATED
HS01234KELCH PROTEIN
HS01235FORMATE DEHYDROGENASE 1
HS01236COILED-COIL DOMAIN-CONTAINING PROTEIN 173
HS01237PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
HS01238FAST LEU-RICH DOMAIN-CONTAINING
HS01239KELCH PROTEIN
HS01240BARDET-BIEDL SYNDROME PROTEIN 5
HS01241COLLAGEN ALPHA
HS01242COILED-COIL DOMAIN-CONTAINING PROTEIN 89
HS01243LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
HS01244SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
HS01245SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
HS01246ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
HS01247KINETOCHORE PROTEIN SPC25-RELATED
HS01248PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS01249LONGEVITY ASSURANCE FACTOR 1 LAG1
HS01250STERILE20-LIKE KINASE, ISOFORM B-RELATED
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