About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS01251BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
HS01252XIN
HS01253TGF-BETA INDUCED APOPTOSIS PROTEIN
HS01254N-ACETYLGALACTOSAMINYLTRANSFERASE
HS01255STI2 PROTEIN-RELATED
HS01256VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
HS01257AMINO ACID TRANSPORTER
HS01258CORDON-BLEU
HS01259GROWTH FACTOR RECEPTOR-BOUND PROTEIN
HS01260AAA DOMAIN-CONTAINING
HS01261PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
HS01262HELICASE WITH DEATH DOMAIN-RELATED
HS01263GLUCAGON
HS01264T-BOX PROTEIN-RELATED
HS01265TRAF FAMILY MEMBER-ASSOCIATED NF-KAPPA-B ACTIVATOR
HS01266RNA BINDING PROTEIN
HS01267MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
HS01268TRANSCRIPTION INTERMEDIARY FACTOR
HS01269
HS01270ROLLING PEBBLES, ISOFORM B
HS01271DEATH-ASSOCIATED PROTEIN 1
HS01272PLAKOPHILLIN-RELATED
HS01273MUTATED IN BLADDER CANCER 1
HS01274URIDINE PHOSPHORYLASE
HS01275SI:DKEY-276J7.1
HS01276TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
HS01277TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
HS01278GENERAL RECEPTOR FOR PHOSPHOINOSITIDES 1-ASSOCIATED SCAFFOLD PROTEIN-RELATED
HS01279
HS01280N-ACETYLGALACTOSAMINYLTRANSFERASE
HS01281NUCLEAR HORMONE RECEPTOR
HS01282INWARD RECTIFIER POTASSIUM CHANNEL
HS01283N-ACETYLGALACTOSAMINYLTRANSFERASE
HS01284PROTEIN REPRIMO-RELATED
HS01285PRE-MRNA-PROCESSING PROTEIN PRP40
HS01286FORMIN-LIKE PROTEIN
HS01287SMALL UBIQUITIN-RELATED MODIFIER
HS01288PROTEIN CBG20567
HS01289AGAP003327-PA
HS01290BETA-GALACTOSIDASE RELATED
HS01291ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
HS01292
HS01293DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS01294DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS01295TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
HS01296KH DOMAIN CONTAINING RNA BINDING PROTEIN
HS01297ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
HS012983-HYDROXYACYL-COA DEHYROGENASE
HS01299UPF0524 PROTEIN C3ORF70
HS01300NME/NM23 FAMILY MEMBER 8
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