About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05806-
Paelopatides05807CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81
Paelopatides05808ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides05809DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Paelopatides05810CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81
Paelopatides05811DNA-DIRECTED RNA POLYMERASE II, III
Paelopatides05812ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY
Paelopatides05813-
Paelopatides05814RHO GTPASE ACTIVATING PROTEIN 11A
Paelopatides05815GUANINE NUCLEOTIDE EXCHANGE FACTOR
Paelopatides05816MATING RESPONSE PROTEIN POI2
Paelopatides05817DNA POLYMERASE ETA
Paelopatides05820REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05822SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides05823REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05824REVERSE TRANSCRIPTASES
Paelopatides05825ENZYMATIC POLYPROTEIN-RELATED
Paelopatides05826-
Paelopatides05827CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05828TRANSPOSON TY3-I GAG-POL POLYPROTEIN
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