About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05741SLR5058 PROTEIN
Paelopatides05742DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides05743NETRIN RECEPTOR UNC5
Paelopatides05744RETROTRANSPOSON
Paelopatides05745PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides05746PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides05747ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides05748-
Paelopatides05749-
Paelopatides05750LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides05752-
Paelopatides05753TYROSINE-PROTEIN KINASE
Paelopatides05754BONUS, ISOFORM C-RELATED
Paelopatides057557,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE
Paelopatides05756-
Paelopatides0575726S PROTESOME SUBUNIT 6
Paelopatides05758ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05759RHO FAMILY GTPASE
Paelopatides05760CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides05761-
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