About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05786-
Paelopatides05787POL PROTEIN
Paelopatides05788PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
Paelopatides05789FIBROBLAST GROWTH FACTOR RECEPTOR
Paelopatides05790-
Paelopatides05791PROTEIN CBG26694
Paelopatides05792PROTEIN CBG26694
Paelopatides05793POL PROTEIN
Paelopatides05794DIMETHYLANILINE MONOOXYGENASE
Paelopatides05795GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides05796-
Paelopatides05797XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Paelopatides05798-
Paelopatides05799SLR5058 PROTEIN
Paelopatides05800BUCENTAUR RELATED
Paelopatides05801GAG-RELATED PROTEIN
Paelopatides05802ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides05803ENZYMATIC POLYPROTEIN-RELATED
Paelopatides05804-
Paelopatides05805CYTOCHROME P450 FAMILY 4
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