About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05720METHIONYL-TRNA SYNTHETASE
Paelopatides05721-
Paelopatides05722DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE
Paelopatides05724MATRIX METALLOPROTEINASE
Paelopatides05725PHOSPHOLIPID SCRAMBLASE-RELATED
Paelopatides05726MULTICOPPER OXIDASE-RELATED
Paelopatides05727CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05728-
Paelopatides05729-
Paelopatides05730REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05731TRANSPOSON
Paelopatides05732-
Paelopatides05733TRANSPOSON
Paelopatides05734PROTEASE M1 ZINC METALLOPROTEASE
Paelopatides05735-
Paelopatides05736SLR5058 PROTEIN
Paelopatides05737-
Paelopatides05738-
Paelopatides05739-
Paelopatides05740RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
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