About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05762ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05763WNT RELATED
Paelopatides05768-
Paelopatides05769PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides05770REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05771GUANYLATE BINDING PROTEIN
Paelopatides05772ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides05773PROTEIN CBG26694
Paelopatides05774PROTEIN CBG26694
Paelopatides05775S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides05776ENZYMATIC POLYPROTEIN-RELATED
Paelopatides05777ENDONUCLEASE-RELATED
Paelopatides05778-
Paelopatides05779N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides05780-
Paelopatides05781UNCHARACTERIZED
Paelopatides05782-
Paelopatides05783-
Paelopatides05784-
Paelopatides05785REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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