About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05872CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05873RHO GTPASE-ACTIVATING PROTEIN 190
Paelopatides05874NETRIN/LAMININ-RELATED
Paelopatides05875HMG-BOX TRANSCRIPTION FACTOR BBX
Paelopatides05876PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides05877CDC42 GTPASE-ACTIVATING PROTEIN
Paelopatides05878-
Paelopatides05879G-PROTEIN COUPLED RECEPTOR
Paelopatides05880ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides05881ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides05882OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides05883-
Paelopatides05884-
Paelopatides05885ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides0588652 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides05887ENDONUCLEASE-RELATED
Paelopatides05888-
Paelopatides05889-
Paelopatides05890HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
Paelopatides05891SOLUTE CARRIER FAMILY 2
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