About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57467NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2
Paelopatides57468-
Paelopatides57469RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED
Paelopatides57470PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5
Paelopatides57471GNAT FAMILY N-ACETYLTRANSFERASE
Paelopatides57473PROTEIN CBG26694
Paelopatides57474INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides57475PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Paelopatides57476METALLOPROTEASE TLDD
Paelopatides57477SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAINING
Paelopatides57478-
Paelopatides57479-
Paelopatides57480-
Paelopatides57481PEPTIDYL-TRNA HYDROLASE 2
Paelopatides57482CHONDROITIN SYNTHASE
Paelopatides57483-
Paelopatides57484PROTEIN CBG26694
Paelopatides57485PROTEIN CBG26694
Paelopatides57486CHONDROITIN SYNTHASE
Paelopatides57487RNA POLYMERASE III DNA DIRECTED -RELATED
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