About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56821SUPEROXIDE DISMUTASE CU-ZN -RELATED
Paelopatides56822-
Paelopatides56823E3 UBIQUITIN-PROTEIN LIGASE RAD18
Paelopatides56824TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides56825TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides56826GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE
Paelopatides56827N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D
Paelopatides56828BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides56829ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
Paelopatides56830SPINDLIN
Paelopatides56831-
Paelopatides56832PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
Paelopatides56833SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides56834PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
Paelopatides56835-
Paelopatides56836PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1
Paelopatides56837ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides56838-
Paelopatides56839UNCHARACTERIZED
Paelopatides56840MATRIN 3/NUCLEAR PROTEIN 220-RELATED
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